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Protocols

CSRDB specifications

Information


Unique identifier OMICS_04419
Name CSRDB
Alternative name Cereal small RNAs Database
Restrictions to use None
Maintained Yes

Taxon


  • Plants and Fungi
    • Oryza sativa
    • Zea mays

Publication for Cereal small RNAs Database

CSRDB citations

 (3)
library_books

Translational genomics for plant breeding with the genome sequence explosion

2015
Plant Biotechnol J
PMCID: 5042036
PMID: 26269219
DOI: 10.1111/pbi.12449

[…] tance enables us to regard them as important genomic resources for crop breeding. Several public RNA‐related databases have been constructed, including the Arabidopsis Small RNA Project Database, the Cereal Small RNAs Database and SoyKb (Table ).The functionally identified genes are valuable resources for translational genomics and crop breeding. The functionally annotated genes can be mapped to k […]

library_books

High throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research

2013
BMC Genomics
PMCID: 3870990
PMID: 24160351
DOI: 10.1186/1471-2164-14-735

[…] atabase with sequences from databases designated by NRDR [] as containing miRNAs. Sequences from 15 different databases were included [], miRBase [], miRNAMap [], microRNA.org [], Argonaute, ASRP [], CSRDB [], fRNAdb [], ncRNAdb [], NONCODE [], RFAM [], RNAdb [], smiRNAdb [], TarBase [], UCSC Genome Browser human miRNAs []. Similarity search was performed using WU-BLAST v.2.2.6 with the DUST filte […]

call_split

Short non coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?

2011
Nucleic Acids Res
PMCID: 3326302
PMID: 22139936
DOI: 10.1093/nar/gkr1138
call_split See protocol

[…] sent in at least 50% of the sequences.Images were extracted from the alignment files as eps files and modified using Adobe Illustrator.Rice sRNA Data were obtained from the Cereal Small RNA Database (CSRDB), (). Data included in this analysis are run1 and run2, as well as the sRNA derived from three runs for leaf and inflorescence tissues. The sRNA reads were assembled using the rice chloroplast g […]

Citations

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CSRDB institution(s)
Section of Plant Biology, College of Biological Sciences, University of California, Davis, CA, USA

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