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|Alternative name||Cereal small RNAs Database|
|Restrictions to use||None|
Plants and Fungi
- Oryza sativa
- Zea mays
Publication for Cereal small RNAs Database
Translational genomics for plant breeding with the genome sequence explosion
[…] tance enables us to regard them as important genomic resources for crop breeding. Several public RNA‐related databases have been constructed, including the Arabidopsis Small RNA Project Database, the Cereal Small RNAs Database and SoyKb (Table ).The functionally identified genes are valuable resources for translational genomics and crop breeding. The functionally annotated genes can be mapped to k […]
High throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research
[…] atabase with sequences from databases designated by NRDR  as containing miRNAs. Sequences from 15 different databases were included , miRBase , miRNAMap , microRNA.org , Argonaute, ASRP , CSRDB , fRNAdb , ncRNAdb , NONCODE , RFAM , RNAdb , smiRNAdb , TarBase , UCSC Genome Browser human miRNAs . Similarity search was performed using WU-BLAST v.2.2.6 with the DUST filte […]
Short non coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins?
[…] sent in at least 50% of the sequences.Images were extracted from the alignment files as eps files and modified using Adobe Illustrator.Rice sRNA Data were obtained from the Cereal Small RNA Database (CSRDB), (). Data included in this analysis are run1 and run2, as well as the sRNA derived from three runs for leaf and inflorescence tissues. The sRNA reads were assembled using the rice chloroplast g […]
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