CTCFBSDB statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CTCFBSDB
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Tool usage distribution map

This map represents all the scientific publications referring to CTCFBSDB per scientific context
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Associated diseases

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Popular tool citations

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Protocols

CTCFBSDB specifications

Information


Unique identifier OMICS_00530
Name CTCFBSDB
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Version 2.0
Maintained Yes

Subtool


  • CTCFBS Prediction Tool

Maintainer


  • person_outline Yan Cui

Publications for CTCFBSDB

CTCFBSDB citations

 (3)
library_books

Long lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice

2013
PMCID: 3701217
PMID: 23580197
DOI: 10.1242/dmm.010975

[…] tif in their promoters. From the ‘Behavior, Neurological Disease, and Psychological Disorders’ network, 30 significantly differentially methylated peaks were examined for CTCF-binding sites using the CTCFBS prediction tool (). Of these 30 regions, 12 (40%) showed sequences that represented predicted CTCF-binding motifs (). Eight of these promoter regions showed increased methylation and four showe […]

library_books

A Regulatory Potential of the Xist Gene Promoter in Vole M. rossiaemeridionalis

2012
PLoS One
PMCID: 3350511
PMID: 22606223
DOI: 10.1371/journal.pone.0033994

[…] promoter of several mammals has demonstrated that the CTCF binding region revealed by Pugacheva et al in the human Xist is not well conserved (, ). However, analysis of the Xist minimal promoter by CTCFBS Prediction Tool in CTCFBSDB database (a CTCF binding site database, http://insulatordb.uthsc.edu) found these CTCF binding sites in all the species studied except for rat and vole. In addition, […]

library_books

No Evidence for a Parent of Origin Specific Differentially Methylated Region Linked to RASGRF1

2012
Front Genet
PMCID: 3314240
PMID: 22470404
DOI: 10.3389/fgene.2012.00041

[…] nding site database (CTCFBSDB; http://insulatordb.uthsc.edu/storm.php) contains both experimentally identified and computationally predicted CTCF binding sites. The query sequence was uploaded in the CTCFBS prediction tool. This tool searches the query sequence for CTCFBS core motifs, which are represented by position weight matrices (PWM). A match between a query sequence and a PWM is represented […]


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CTCFBSDB institution(s)
Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, USA; Center for Integrative and Translational Genomics, University of Tennessee Health Science Center, Memphis, TN, USA
CTCFBSDB funding source(s)
Supported by the UT Center for Integrative and Translational Genomics; Department of Defense [W81XHW-05-01- 0227].

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