Simplifies the studies on insulators and their roles in demarcating functional genomic domains. CTCFBSDB is an online database that includes almost 15 million experimentally determined CTCF binding sites across several species. This repository contains several features: (1) inclusion of genomic topological domains defined using Hi-C data; (2) identification of CTCF-binding sequences that overlap a given CTCF-binding sequence; (3) inclusion of occupancy data; (4) classification of motif match type; and (5) integration with Genome Browser.
Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, USA; Center for Integrative and Translational Genomics, University of Tennessee Health Science Center, Memphis, TN, USA
CTCFBSDB funding source(s)
Supported by the UT Center for Integrative and Translational Genomics; Department of Defense [W81XHW-05-01- 0227].