CTdatabase specifications


Unique identifier OMICS_03758
Name CTdatabase
Restrictions to use None
Maintained Yes


  • Primates
    • Homo sapiens

Publication for CTdatabase

CTdatabase citations


Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy

Genome Biol
PMCID: 4377852
PMID: 25853550
DOI: 10.1186/s13059-015-0620-6

[…] The CTDatabase [] was queried for tumor-specific antigens: 92 localized on chromosome X and 124 in the remaining chromosomes. The genes that showed downregulation in the tumor samples compared with normal […]


Immunomic, genomic and transcriptomic characterization of CT26 colorectal carcinoma

BMC Genomics
PMCID: 4007559
PMID: 24621249
DOI: 10.1186/1471-2164-15-190

[…] ed in Additional file and gene membership is listed in Additional file . All identifiers were translated from mouse to human using Homologene []. The list of cancer testes (CT) antigens was from the CTdatabase [].MHC typing and expression: typing and expression were determined using RNA-Seq reads and the seq2HLA algorithm [] using the parameter setting “—best” rather than “-a”. All mouse tissue s […]

CTdatabase institution(s)
Laboratório Nacional de Computação Científica, Petrópolis, RJ, Brazil

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