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CTDB specifications

Information


Unique identifier OMICS_04684
Name CTDB
Alternative name Chickpea Transcriptome Database
Restrictions to use None
Community driven No
User data submission Not allowed
Maintained Yes

Taxon


  • Plants and Fungi
    • Cicer arietinum

Publications for Chickpea Transcriptome Database

CTDB citations

 (21)
library_books

Identification of a flagellar protein implicated in the gravitaxis in the flagellate Euglena gracilis

2018
Sci Rep
PMCID: 5954063
PMID: 29765103
DOI: 10.1038/s41598-018-26046-8

[…] performed using expasy online tool, COILS (http://embnet.vital-it.ch/software/COILS_form.html) and an online database for the prediction of Calmodulin binding sites (http://calcium.uhnres.utoronto.ca/ctdb/ctdb/home.html). The prediction of phosphorylation sites in EgPCDUF4201 was done by using NetPhos 2.0 server (http://www.cbs.dtu.dk/services/NetPhos-2.0/). […]

library_books

Calmodulin regulates Cav3 T type channels at their gating brake

2017
PMCID: 5723990
PMID: 28972185
DOI: 10.1074/jbc.M117.807925

[…] http://tango.crg.es/).6 All phylogenetic alignments were done using variations of the BLAST tool on the GenBankTM web site. The CaM-binding site prediction database (http://calcium.uhnres.utoronto.ca/ctdb/contacts/index.htm)6 was used to search for other possible “hits” in the channel ORFs () and to design optimal peptide sequences for synthesis. […]

library_books

Nosocomial transmission of Clostridium difficile Genotype ST81 in a General Teaching Hospital in China traced by whole genome sequencing

2017
Sci Rep
PMCID: 5575120
PMID: 28851988
DOI: 10.1038/s41598-017-09878-8

[…] using CDI (28/80; 35.0%), followed by ST2 (9.9%; 9/91), ST54 (8.8%; 8/91), and ST129 (8.8%; 8/91). ST3 strains included both toxigenic and non-toxigenic types. None of the isolates contained ctdA and ctdB. Of the 80 cases, 44 cases (55.0%) occurred in female patients and 17 cases (21.3%) occurred in outpatients. Specimens were also tested for S. aureus, Salmonella and Shigella, but these bacteria […]

library_books

3D QSAR and Molecular Docking Studies on the TcPMCA1 Mediated Detoxification of Scopoletin and Coumarin Derivatives

2017
Int J Mol Sci
PMCID: 5535873
PMID: 28653986
DOI: 10.3390/ijms18071380

[…] embrane domain positions and protein domain were estimated using Phobius (Available online: http://phobius.sbc.su.se/), Calmodulin Target Database (Available online: http://calcium.uhnres.utoronto.ca/ctdb/pub_pages/search/index.htm), and ATPint (Available online: http://www.imtech.res.in/raghava/atpint/submit.html) servers. Signal peptides were predicted using Signa1P 3.0 (Available online: http:/ […]

library_books

Chickpea Ferritin CaFer1 Participates in Oxidative Stress Response, and Promotes Growth and Development

2016
Sci Rep
PMCID: 4977498
PMID: 27503257
DOI: 10.1038/srep31218

[…] We screened the Chickpea Transcriptome Database [CTDB (http://www.nipgr.res.in/ctdb.html)], which led to the identification of two more forms of ferritin, referred to as CaFer2 (NCBI accession number: gi|502147479:10 […]

library_books

Dissecting the Root Nodule Transcriptome of Chickpea (Cicer arietinum L.)

2016
PLoS One
PMCID: 4922567
PMID: 27348121
DOI: 10.1371/journal.pone.0157908

[…] ison of the nodule transcriptome was done with the publicly available chickpea transcriptomes of tissues such as chickpea shoot, root, mature leaf, flower bud and young pod [](http://www.nipgr.res.in/ctdb.html) and with the transcriptome of chickpea seed []. A TBLASTX search was done using chickpea nodule transcriptome as query. This alignment revealed 5,907 unigenes that did not find a match with […]

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CTDB institution(s)
Functional and Applied Genomics Laboratory, National Institute of Plant Genome Research (NIPGR), New Delhi, India
CTDB funding source(s)
Supported by the Department of Biotechnology, Government of India, New Delhi, under the Next Generation Challenge Program on Chickpea Genomics (grant number BT/PR12919/AGR/02/676/2009 from 2009- 2014).

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