CTDB

[…] performed using expasy online tool, COILS (http://embnet.vital-it.ch/software/COILS_form.html) and an online database for the prediction of Calmodulin binding sites (http://calcium.uhnres.utoronto.ca/ctdb/ctdb/home.html). The prediction of phosphorylation sites in EgPCDUF4201 was done by using NetPhos 2.0 server (http://www.cbs.dtu.dk/services/NetPhos-2.0/). […]

[…] http://tango.crg.es/).6 All phylogenetic alignments were done using variations of the BLAST tool on the GenBankTM web site. The CaM-binding site prediction database (http://calcium.uhnres.utoronto.ca/ctdb/contacts/index.htm)6 was used to search for other possible “hits” in the channel ORFs () and to design optimal peptide sequences for synthesis. […]

[…] using CDI (28/80; 35.0%), followed by ST2 (9.9%; 9/91), ST54 (8.8%; 8/91), and ST129 (8.8%; 8/91). ST3 strains included both toxigenic and non-toxigenic types. None of the isolates contained ctdA and ctdB. Of the 80 cases, 44 cases (55.0%) occurred in female patients and 17 cases (21.3%) occurred in outpatients. Specimens were also tested for S. aureus, Salmonella and Shigella, but these bacteria […]

[…] embrane domain positions and protein domain were estimated using Phobius (Available online: http://phobius.sbc.su.se/), Calmodulin Target Database (Available online: http://calcium.uhnres.utoronto.ca/ctdb/pub_pages/search/index.htm), and ATPint (Available online: http://www.imtech.res.in/raghava/atpint/submit.html) servers. Signal peptides were predicted using Signa1P 3.0 (Available online: http:/ […]

[…] We screened the Chickpea Transcriptome Database [CTDB (http://www.nipgr.res.in/ctdb.html)], which led to the identification of two more forms of ferritin, referred to as CaFer2 (NCBI accession number: gi|502147479:10 […]

[…] ison of the nodule transcriptome was done with the publicly available chickpea transcriptomes of tissues such as chickpea shoot, root, mature leaf, flower bud and young pod [](http://www.nipgr.res.in/ctdb.html) and with the transcriptome of chickpea seed []. A TBLASTX search was done using chickpea nodule transcriptome as query. This alignment revealed 5,907 unigenes that did not find a match with […]