CTDGFinder specifications

Information


Unique identifier OMICS_16236
Name CTDGFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A series of annotation files and one precomputed all vs. all BLASTP results output.
Output data The identified CTDGs.
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements
Numpy, Pandas, numexpr, Scipy, SciKit-learn, termcolor, biopython, BLASTP
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Antonis Rokas

Publication for CTDGFinder

CTDGFinder institution(s)
Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA
CTDGFinder funding source(s)
Supported by the Graduate Program in Biological Sciences at Vanderbilt University, by the March of Dimes through the March of Dimes Prematurity Research Center Ohio Collaborative and by the National Science Foundation (DEB-1442113).

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