CTDGFinder specifications

Unique identifier:
OMICS_16236
Software type:
Package/Module
Restrictions to use:
None
Output data:
The identified CTDGs.
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Name:
CTDGFinder
Interface:
Command line interface
Input data:
A series of annotation files and one precomputed all vs. all BLASTP results output.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
Numpy, Pandas, numexpr, Scipy, SciKit-learn, termcolor, biopython, BLASTP

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

CTDGFinder distribution

download

CTDGFinder support

Documentation

Maintainer

  • Antonis Rokas <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA

Funding source(s)

This work was supported by the Graduate Program in Biological Sciences at Vanderbilt University, and in part by the March of Dimes through the March of Dimes Prematurity Research Center Ohio Collaborative and by the National Science Foundation (DEB-1442113).

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools