CTLPScanner specifications
Information
| Unique identifier | OMICS_11873 |
|---|---|
| Name | CTLPScanner |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | The screening of chromothripsis event is carried out based on DNA copy number segmentation data, which can be generated by aCGH or SNP array platforms. The minimum required data contents include the sample name, chromosome number, start and stop positions of each segment and log normalized signal intensity. The input file should be tab-delimited with an optional first line identifying the columns. All required data fields can be generated by using CBS algorithm. |
| Output data | The output interface presents intuitive graphical representations of detected chromosome pulverization region, as well as detailed results in table format. CTLPScanner also provides additional information for associated genes in chromothripsis region to help identify the potential candidates involved in tumorigenesis. |
| Programming languages | Javascript, Perl, PHP, R |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Haoyang Cai <>
Information
| Unique identifier | OMICS_11873 |
|---|---|
| Name | CTLPScanner |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
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Maintainer
- person_outline Haoyang Cai <>
Publications for CTLPScanner
2016 Nucleic Acids Res
PMCID: 4987951
PMID: 27185889
DOI: 10.1093/nar/gkw434
2014 BMC Genomics
PMCID: 3909908
PMID: 24476156
DOI: 10.1186/1471-2164-15-82
CTLPScanner institution(s)
Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, Chengdu, Sichuan, China; State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy, Chengdu, Sichuan, China; Department of Gastrointestinal Surgery, West China Hospital, Sichuan University, Chengdu, Sichuan, China
CTLPScanner funding source(s)
National Natural Science Foundation of China [31571314, 81402496]
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