CTLPScanner specifications

Information


Unique identifier OMICS_11873
Interface Web user interface
Restrictions to use None
Input data The screening of chromothripsis event is carried out based on DNA copy number segmentation data, which can be generated by aCGH or SNP array platforms. The minimum required data contents include the sample name, chromosome number, start and stop positions of each segment and log normalized signal intensity. The input file should be tab-delimited with an optional first line identifying the columns. All required data fields can be generated by using CBS algorithm.
Output data The output interface presents intuitive graphical representations of detected chromosome pulverization region, as well as detailed results in table format. CTLPScanner also provides additional information for associated genes in chromothripsis region to help identify the potential candidates involved in tumorigenesis.
Programming languages Javascript, Perl, PHP, R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Haoyang Cai <>

Information


Unique identifier OMICS_11873
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Haoyang Cai <>

CTLPScanner articles

CTLPScanner institution(s)
Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, Chengdu, Sichuan, China; State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy, Chengdu, Sichuan, China; Department of Gastrointestinal Surgery, West China Hospital, Sichuan University, Chengdu, Sichuan, China
CTLPScanner funding source(s)
National Natural Science Foundation of China [31571314, 81402496]

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