CTLPScanner specifications

Unique identifier:
OMICS_11873
Restrictions to use:
None
Output data:
The output interface presents intuitive graphical representations of detected chromosome pulverization region, as well as detailed results in table format. CTLPScanner also provides additional information for associated genes in chromothripsis region to help identify the potential candidates involved in tumorigenesis.
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
The screening of chromothripsis event is carried out based on DNA copy number segmentation data, which can be generated by aCGH or SNP array platforms. The minimum required data contents include the sample name, chromosome number, start and stop positions of each segment and log normalized signal intensity. The input file should be tab-delimited with an optional first line identifying the columns. All required data fields can be generated by using CBS algorithm.
Programming languages:
Javascript, Perl, PHP, R
Stability:
Stable

CTLPScanner specifications

Unique identifier:
OMICS_11873
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Stability:
Stable

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CTLPScanner support

Maintainer

  • Haoyang Cai <>
  • Haoyang Cai <>

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Publications

Institution(s)

Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University, Chengdu, Sichuan, China; State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy, Chengdu, Sichuan, China; Department of Gastrointestinal Surgery, West China Hospital, Sichuan University, Chengdu, Sichuan, China

Funding source(s)

National Natural Science Foundation of China [31571314, 81402496]

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