CTree protocols

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CTree specifications

Information


Unique identifier OMICS_04816
Name CTree
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for CTree

CTree in pipelines

 (2)
2017
PMCID: 5214804
PMID: 28070453
DOI: 10.7717/peerj.2733

[…] model allowing for a gamma-distributed rate variation among sites with 500 bootstrap replicates. these maximum likelihood trees were subsequently used to automatically detect clusters with the ctree heuristic cluster finding algorithm using the most sensitive parameters (). this method takes into account the overall genetic diversity of a gene segment when partitioning the sequence data […]

2016
PMCID: 5239506
PMID: 27429195
DOI: 10.18632/oncotarget.10543

[…] (infinium humanmethylation 450k)., overall survival dependent on mgat3 expression was investigated using kaplan-meier curves. mgat3 expression was dichotomized using tree based model partitioning (“ctree” in r package “party”). computations of the predicted survivor curves were used for cox proportional hazards regression model (r package “survival”). multivariate analysis was performed […]


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CTree in publications

 (37)
PMCID: 5839764
PMID: 29374026
DOI: 10.1084/jem.20171738

[…] (v2.24) to find and annotate convt regions (regions where >100 bp of sense and antisense transcription overlap occurs)., the conditional inference tree for classification was built using the ctree function from the party r package with default parameters. genes with a background mutation frequency >5 × 10−4 were excluded to avoid artifacts. the following variables were fed […]

PMCID: 5779663
PMID: 29360863
DOI: 10.1371/journal.pone.0191435

[…] numeric scales where n and λ could range from 0 to ∞ and φ could range from 0 to 1., we used the same training data sets and explanatory variables as our variable importance analysis and the ctree function in the r package party [] to grow separate classification trees for each set of predictor variables for the trb and uarb. we converted the extant variable from the variable importance […]

PMCID: 5779661
PMID: 29360875
DOI: 10.1371/journal.pone.0191248

[…] public hospitals located in three different autonomous communities of spain. to identify risk factors (rfs) for ecs, we used likelihood ratios and logistic regression, fitted a classification tree (ctree), and analyzed a random forest model (rfm). we used the areas under the receiver-operating-characteristic (roc) curves (aucs) to assess their da., the magnitude of the lr+ for all putative […]

PMCID: 5755898
PMID: 29304149
DOI: 10.1371/journal.pone.0190832

[…] and in 2011 as season 9 (january), 10 (april), 11 (august), and 12 (october)., bdata in the parentheses indicate “number of trees affected by floods/number of trees unaffected by floods.”, ctree species with fewer than five individuals in the sample area were combined., after disturbances by typhoon sinlaku–induced floods and mudslides, our season 1 survey revealed that 799 trees […]

PMCID: 5651705
PMID: 29104316
DOI: 10.1007/s00227-017-3241-7

[…] rf models characterised by a good prediction performance and enabled to identify the range of the morphometric ratios values associated with each sex and/or maturity stage of male and female. the ‘ctree’ function for conditional inference trees in the ‘party’ r package (hothorn et al. ) was used. live fish (males) were then used to test if the trade-off values of the morphometric ratios […]


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CTree institution(s)
Faculty of Life Science, University of Manchester, Michael Smith Building, Oxford Road, Manchester, UK

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