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CTS specifications

Information


Unique identifier OMICS_06610
Name CTS
Alternative name Chemical Translation Service
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Chemical Translation Service

CTS citations

 (10)
library_books

Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data

2018
BMC Bioinformatics
PMCID: 5749025
PMID: 29291722
DOI: 10.1186/s12859-017-2006-0

[…] e than one PubChem, HMDB or ChEBI identifiers were found in this work, which reduce enrichment analyses’ accuracy. Several on-going initiatives on identifiers standardization such as BridgeDB and the Chemical Translation Service are trying to overcome redundancy [–]. Some tools such as MetaboAnalyst, ConsensusPathDB or PathVisio embrace these initiatives and accept different types of identifiers, […]

library_books

A review of computational tools for design and reconstruction of metabolic pathways

2017
PMCID: 5851934
PMID: 29552648
DOI: 10.1016/j.synbio.2017.11.002

[…] tructures and compound synonyms . RxnFinder used PubChem database to unify compound synonyms and added more than 50,000 reactions curated from literature to its in-house database . Alternatively, the Chemical Translation Service and UniChem provide a simple web application that can interconvert metabolite IDs across different databases. Organism-specific GSMs or knowledge-bases (e.g., EcoCyc , A […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] uced dissociation; cosmiq: combining single masses into quantities; COVAIN: Covariance Inverse; CRAN: Comprehensive R Archive Network; CSI: FingerID: compound structure identification: FingerID; CTS: Chemical Translation Service; DIA: data-independent acquisition; EIC: extracted ion chromatogram; EssOilDB: Essential Oil Database; EXIMS: Exploring Imaging Mass Spectrometry Data; FT: Fourier transfo […]

library_books

Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules—Search Options and Applications in Food Science

2016
Int J Mol Sci
PMCID: 5187839
PMID: 27929431
DOI: 10.3390/ijms17122039

[…] luding the International Journal of Molecular Sciences). In some databases, identifiers can be found by translating a compound’s systematic name or chemical code (SMILES or InChI) with the use of the Chemical Translation Service (University of California, Davis, CA, USA) []. Chemical names can also be translated into other identifiers in the Chemical Identifier Resolver (National Institute of Canc […]

library_books

Metabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark Conditions

2016
Sci Rep
PMCID: 5071901
PMID: 27762345
DOI: 10.1038/srep35778

[…] med using functionalities available at MBRole (http://csbg.cnb.csic.es/mbrole/), MSEA (http://www.msea.ca/MSEA/) and MetPA (http://metpa.metabolomics.ca/MetPA/) while ID conversions were performed at Chemical Translation Service (CTS: http://cts.fiehnlab.ucdavis.edu/conversion/batch) (). Short Time series Expression Miner (STEM) was used as a Java implementation with a graphical user interface ava […]

library_books

Plasma Biomarkers for Monitoring Brain Pathophysiology in FMR1 Premutation Carriers

2016
PMCID: 4981605
PMID: 27570505
DOI: 10.3389/fnmol.2016.00071

[…] Metabolite identification was performed through the use of several databases including PubChem Compound (), KEGG (), and HMDB (, , ) and the online chemical translation service (). Raw data were normalized to the average of pooled control data and results were plotted as in LOG2 scale, so that equal fold changes (up/down-regulated) will have the […]


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CTS institution(s)
University of California Davis, CA, Genome Center, USA

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