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CTS specifications

Information


Unique identifier OMICS_06610
Name CTS
Alternative name Chemical Translation Service
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Chemical Translation Service

CTS in publications

 (10)
PMCID: 5749025
PMID: 29291722
DOI: 10.1186/s12859-017-2006-0

[…] than one pubchem, hmdb or chebi identifiers were found in this work, which reduce enrichment analyses’ accuracy. several on-going initiatives on identifiers standardization such as bridgedb and the chemical translation service are trying to overcome redundancy [–]. some tools such as metaboanalyst, consensuspathdb or pathvisio embrace these initiatives and accept different types of identifiers, […]

PMCID: 5851934
PMID: 29552648
DOI: 10.1016/j.synbio.2017.11.002

[…] and compound synonyms . rxnfinder used pubchem database to unify compound synonyms and added more than 50,000 reactions curated from literature to its in-house database . alternatively, the chemical translation service and unichem provide a simple web application that can interconvert metabolite ids across different databases. organism-specific gsms or knowledge-bases (e.g., ecocyc , […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] from the development of identifiers to reduce duplication of information such as spectral hash [], designed for the mona database, to tools like metmask [] for managing different identifiers, chemical translation service (cts) [] for translation of chemical identifiers, phenometer [] for querying databases based on metabolic phenotype, and metab2mesh [] for a more efficient literature […]

PMCID: 5187839
PMID: 27929431
DOI: 10.3390/ijms17122039

[…] the international journal of molecular sciences). in some databases, identifiers can be found by translating a compound’s systematic name or chemical code (smiles or inchi) with the use of the chemical translation service (university of california, davis, ca, usa) []. chemical names can also be translated into other identifiers in the chemical identifier resolver (national institute […]

PMCID: 5071901
PMID: 27762345
DOI: 10.1038/srep35778

[…] using functionalities available at mbrole (http://csbg.cnb.csic.es/mbrole/), msea (http://www.msea.ca/msea/) and metpa (http://metpa.metabolomics.ca/metpa/) while id conversions were performed at chemical translation service (cts: http://cts.fiehnlab.ucdavis.edu/conversion/batch) (). short time series expression miner (stem) was used as a java implementation with a graphical user interface […]


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CTS institution(s)
University of California Davis, CA, Genome Center, USA

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