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CTX-BLAST

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A software tool to incorporate contextual alignment model into the popular protein BLAST program. CTX-BLAST allows users to investigate the effect of context-dependency in the protein alignment much more efficient than using previous dynamic algorithms. In addition, CTX-BLAST makes use of non-symmetric contextual substitution tables and calculates the statistical significance of a given alignment according to the contextual statistical model.

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CTX-BLAST classification

CTX-BLAST specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
Other
Version:
1.0
Maintained:
Yes
Interface:
Command line interface
Input data:
A PDB file
Programming languages:
C
Computer skills:
Advanced
Stability:
Stable

CTX-BLAST distribution

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CTX-BLAST support

Documentation

Maintainer

  • Anna Gambin <>

Credits

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Publications

Institution(s)

Institute of Informatics, Warsaw University, Warsaw, Poland

Funding source(s)

This work was supported by Ministry of Science and Higher Education grant 3 T11F 021 28.

Link to literature

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