CTX-BLAST specifications


Unique identifier OMICS_13980
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A PDB file
Operating system Unix/Linux
Programming languages C
License Other
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes



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  • person_outline Anna Gambin <>

Publication for CTX-BLAST

CTX-BLAST in publication

PMCID: 2678096
PMID: 19379500
DOI: 10.1186/1471-2105-10-112

[…] can be collected with a minor modification of the smith-waterman algorithm []. several applications have recently been developed that incorporate island statistics for score normalization, including ctx-blast [], consequences[], and cis []., an added benefit of the island statistics (and other score normalization methods based on sequence shuffling) is flexibility in choosing the scoring system. […]

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CTX-BLAST institution(s)
Institute of Informatics, Warsaw University, Warsaw, Poland
CTX-BLAST funding source(s)
This work was supported by Ministry of Science and Higher Education grant 3 T11F 021 28.

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