CTX-BLAST statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CTX-BLAST
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CTX-BLAST specifications

Information


Unique identifier OMICS_13980
Name CTX-BLAST
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A PDB file
Operating system Unix/Linux
Programming languages C
License Other
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Anna Gambin

Publication for CTX-BLAST

CTX-BLAST citation

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Island method for estimating the statistical significance of profile profile alignment scores

2009
BMC Bioinformatics
PMCID: 2678096
PMID: 19379500
DOI: 10.1186/1471-2105-10-112

[…] can be collected with a minor modification of the Smith-Waterman algorithm []. Several applications have recently been developed that incorporate island statistics for score normalization, including CTX-BLAST [], ConSequenceS[], and CIS [].An added benefit of the island statistics (and other score normalization methods based on sequence shuffling) is flexibility in choosing the scoring system. In […]


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CTX-BLAST institution(s)
Institute of Informatics, Warsaw University, Warsaw, Poland
CTX-BLAST funding source(s)
This work was supported by Ministry of Science and Higher Education grant 3 T11F 021 28.

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