CUBIC specifications


Unique identifier OMICS_24180
Alternative name Clear, Unobstructed Brain/Body Imaging Cocktails and Computational analysis
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
ImageMagick, ANTS
Maintained Yes




No version available

Additional information

Publications for Clear, Unobstructed Brain/Body Imaging Cocktails and Computational analysis

CUBIC institution(s)
Department of Systems Pharmacology, The University of Tokyo, Tokyo, Japan; Japan Agency for Medical Research and Development (AMED) – Core Research for Evolutionary Science and Technology (CREST), AMED, Tokyo, Japan; Laboratory for Synthetic Biology, RIKEN Quantitative Biology Center (QBiC), Osaka, Japan; School of Electrical Engineering and Computer Science, Science and Engineering Faculty, Queensland University of Technology (QUT), Brisbane, QSL, Australia; Department of Anatomy and Embryology, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan; PhD Program in Human Biology, School of Integrative and Global Majors, University of Tsukuba, Ibaraki, Japan
CUBIC funding source(s)
Supported by the Program for Innovative Cell Biology by Innovative Technology and the Brain Mapping by Integrated Neurotechnologies for Disease Studies (Brain/MINDS) from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan; a Grant-in-Aid for Scientific Research (S) (grant No. 25221004), for Scientific Research on Innovative Areas (grant no. 23115006) and for Young Scientists (A) (grant no. 15H05650) from MEXT/Japan Society for the Promotion of Science (JSPS); by the strategic programs for R&D (President’s discretionary fund) of RIKEN; by an intramural Grant-in-Aid from the RIKEN QBiC; by a grant from AMED-CREST; by the RIKEN Special Postdoctoral Research Program; by the RIKEN Foreign Postdoctoral Researcher Program; by a Grant-in-Aid from the Japan Foundation for Applied Enzymology; by the Brain Sciences Project of the Center for Novel Science Initiatives of the National Institutes of Natural Sciences (grant nos. BS261004 and BS271005); and by the Tokyo Society of Medical Science; and by the Shimabara Science Promotion Foundation.

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