cudaMap specifications


Unique identifier OMICS_23118
Name cudaMap
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages C, C++
Computer skills Advanced
Stability No
Maintained No


No version available


This tool is not available anymore.

Publication for cudaMap

cudaMap citation


Connectivity mapping using a combined gene signature from multiple colorectal cancer datasets identified candidate drugs including existing chemotherapies

BMC Syst Biol
PMCID: 4565135
PMID: 26356760
DOI: 10.1186/1752-0509-9-S5-S4

[…] ch consequently helps to control false positive findings. SscMap has been shown to be an effective and robust framework to achieve high accuracy in identifying potential drugs [,]. A GPU-enabled tool cudaMap [], which implements a parallel computing model of the sscMap algorithms, can greatly reduce the processing time of connectivity mapping.Connectivity mapping represents a valuable bioinformati […]

cudaMap institution(s)
Centre for Cancer Research and Cell Biology (CCRCB), Queen’s University Belfast (QUB), Belfast, Northern Ireland, UK
cudaMap funding source(s)
Supported in part by the Biotechnology and Biological Sciences Research Council (BBSRC, UK) grant BB/I009051/1 and by the Department for Employment and Learning through its “Strengthening the all-Island Research base” initiative.

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