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CutProtFam-Pred specifications

Information


Unique identifier OMICS_05561
Name CutProtFam-Pred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CutProtFam-Pred

CutProtFam-Pred citations

 (4)
call_split

A comprehensive omics analysis and functional survey of cuticular proteins in the brown planthopper

2018
Proc Natl Acad Sci U S A
PMCID: 5960286
PMID: 29712872
DOI: 10.1073/pnas.1716951115
call_split See protocol

[…] Insect CP amino acids and gene sequences were obtained from NCBI (https://www.ncbi.nlm.nih.gov/), EnsemblMetazoa (metazoa.ensembl.org/), CutProtFam (aias.biol.uoa.gr/CutProtFam-Pred/home.php) (), and CuticleDB (bioinformatics2.biol.uoa.gr/cuticleDB/) (). The common motifs of CPs from D. melanogaster, Bombyx mori, A. gambiae, Tribolium castaneum, Apis mellifera, an […]

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The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

2016
Genome Biol
PMCID: 5034548
PMID: 27659211
DOI: 10.1186/s13059-016-1049-2

[…] otifs that are characteristic for several families of cuticle proteins [], 202 genes coding for putative cuticle proteins were identified (Additional file : Table S20). These genes were analyzed with CutProtFam-Pred, a cuticular protein family prediction tool [], and 195 genes could be assigned to one of eight families (CPR, CPAP1, CPAP3, CPF, CPCFC, CPLCA, CPLCG, and TWDL) (Additional file : Tabl […]

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Tribolium castaneum RR 1 Cuticular Protein TcCPR4 Is Required for Formation of Pore Canals in Rigid Cuticle

2015
PLoS Genet
PMCID: 4335487
PMID: 25664770
DOI: 10.1371/journal.pgen.1004963

[…] teins (NP_001139387), denoted as TcCPR4 (the numbering of CPs in T. castaneum does not reflect orthology with CPs in other species assigned the same number), which is also a member of the CPR family (CutProtFam-Pred: http://bioinformatics.biol.uoa.gr/CutProtFam-Pred/). Both proteins exhibited the same six matched peptides that are highlighted in gray in . Peptide coverage for the mature TcCPR4 pro […]

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The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

2014
PLoS Biol
PMCID: 4244043
PMID: 25423365
DOI: 10.1371/journal.pbio.1002005

[…] 2, with the former primarily associated with flexible cuticle, the latter with rigid cuticle. Interestingly, while chelicerates studied to date have no members of the RR-1 subfamily (as classified at CutProtFam-Pred, http://aias.biol.uoa.gr/CutProtFam-Pred/home.php), seven of the S. maritima CPR proteins clearly belong to this class. This would be consistent with the origin of the RR1-coding genes […]

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CutProtFam-Pred institution(s)
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens, Greece; Department of Cellular Biology, University of Georgia, Athens, GA, USA

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