CutProtFam-Pred statistics

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CutProtFam-Pred specifications

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Unique identifier OMICS_05561
Name CutProtFam-Pred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CutProtFam-Pred

CutProtFam-Pred in publications

 (5)
PMCID: 5960286
PMID: 29712872
DOI: 10.1073/pnas.1716951115

[…] of 16:8 h (light:dark)., insect cp amino acids and gene sequences were obtained from ncbi (https://www.ncbi.nlm.nih.gov/), ensemblmetazoa (metazoa.ensembl.org/), cutprotfam (aias.biol.uoa.gr/cutprotfam-pred/home.php) (), and cuticledb (bioinformatics2.biol.uoa.gr/cuticledb/) (). the common motifs of cps from d. melanogaster, bombyx mori, a. gambiae, tribolium castaneum, apis mellifera, […]

PMCID: 5395146
PMID: 28419115
DOI: 10.1371/journal.pone.0175423

[…] which peptides were recovered did not score as either rr-1 or rr-2 and are omitted here., the an. gambiae proteome has unique proteins for 45 rr-1, 101 rr-2 and for 4 cprs that did not score with cutprotfam-pred (http://aias.biol.uoa.gr/cutprotfam-pred/home.php)., the results from a statistical analysis of the data in tables and are given below and in . the soluble proteins had fewer […]

PMCID: 5034548
PMID: 27659211
DOI: 10.1186/s13059-016-1049-2

[…] that are characteristic for several families of cuticle proteins [], 202 genes coding for putative cuticle proteins were identified (additional file : table s20). these genes were analyzed with cutprotfam-pred, a cuticular protein family prediction tool [], and 195 genes could be assigned to one of eight families (cpr, cpap1, cpap3, cpf, cpcfc, cplca, cplcg, and twdl) (additional file : […]

PMCID: 4335487
PMID: 25664770
DOI: 10.1371/journal.pgen.1004963

[…] (np_001139387), denoted as tccpr4 (the numbering of cps in t. castaneum does not reflect orthology with cps in other species assigned the same number), which is also a member of the cpr family (cutprotfam-pred: http://bioinformatics.biol.uoa.gr/cutprotfam-pred/). both proteins exhibited the same six matched peptides that are highlighted in gray in . peptide coverage for the mature tccpr4 […]

PMCID: 4244043
PMID: 25423365
DOI: 10.1371/journal.pbio.1002005

[…] with the former primarily associated with flexible cuticle, the latter with rigid cuticle. interestingly, while chelicerates studied to date have no members of the rr-1 subfamily (as classified at cutprotfam-pred, http://aias.biol.uoa.gr/cutprotfam-pred/home.php), seven of the s. maritima cpr proteins clearly belong to this class. this would be consistent with the origin of the rr1-coding […]


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CutProtFam-Pred institution(s)
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens, Greece; Department of Cellular Biology, University of Georgia, Athens, GA, USA

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