CutProtFam-Pred

[…] of 16:8 h (light:dark)., insect cp amino acids and gene sequences were obtained from ncbi (https://www.ncbi.nlm.nih.gov/), ensemblmetazoa (metazoa.ensembl.org/), cutprotfam (aias.biol.uoa.gr/cutprotfam-pred/home.php) (), and cuticledb (bioinformatics2.biol.uoa.gr/cuticledb/) (). the common motifs of cps from d. melanogaster, bombyx mori, a. gambiae, tribolium castaneum, apis mellifera, […]

[…] which peptides were recovered did not score as either rr-1 or rr-2 and are omitted here., the an. gambiae proteome has unique proteins for 45 rr-1, 101 rr-2 and for 4 cprs that did not score with cutprotfam-pred (http://aias.biol.uoa.gr/cutprotfam-pred/home.php)., the results from a statistical analysis of the data in tables and are given below and in . the soluble proteins had fewer […]

[…] that are characteristic for several families of cuticle proteins [], 202 genes coding for putative cuticle proteins were identified (additional file : table s20). these genes were analyzed with cutprotfam-pred, a cuticular protein family prediction tool [], and 195 genes could be assigned to one of eight families (cpr, cpap1, cpap3, cpf, cpcfc, cplca, cplcg, and twdl) (additional file : […]

[…] (np_001139387), denoted as tccpr4 (the numbering of cps in t. castaneum does not reflect orthology with cps in other species assigned the same number), which is also a member of the cpr family (cutprotfam-pred: http://bioinformatics.biol.uoa.gr/cutprotfam-pred/). both proteins exhibited the same six matched peptides that are highlighted in gray in . peptide coverage for the mature tccpr4 […]

[…] with the former primarily associated with flexible cuticle, the latter with rigid cuticle. interestingly, while chelicerates studied to date have no members of the rr-1 subfamily (as classified at cutprotfam-pred, http://aias.biol.uoa.gr/cutprotfam-pred/home.php), seven of the s. maritima cpr proteins clearly belong to this class. this would be consistent with the origin of the rr1-coding […]