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CyanoLyase

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A manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases. CyanoLyase provides an extensive collection of phycobilin lyases and related proteins, classified in clans, subclans, families and subfamilies. The website also gives access to bioinformatic tools to ease the annotation of these sequences in forthcoming genomes of phycobiliprotein-containing organisms. As such, the website will be updated regularly as new data become available and will therefore be a long-term resource. Users can monitor directly from the web interface the latest changes that have occurred in the database using the corresponding scrolldown menu.

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CyanoLyase classification

CyanoLyase specifications

Restrictions to use:
None
Community driven:
No
User data submission:
Allowed
Database management system:
MySQL
Data access:
File download, Browse
Maintained:
Yes

CyanoLyase support

Documentation

Maintainer

  • Frédéric Partensky <>

Credits

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Publications

Institution(s)

GenOuest Platform, Rennes, France; Dyliss team, INRIA/Irisa, Campus de Beaulieu, Rennes, France; UPMC-Université Paris VI, Station Biologique, Place Georges Teissier, Roscoff, France; CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Roscoff, France; CNRS, FR2424 Analysis and Bioinformatics for Marine Science (ABiMS), Roscoff, France; Department of Biological Sciences, University of New Orleans, New Orleans, LA, USA

Funding source(s)

This work was supported by the Agence Nationale de la Recherche Scientifique (ANR), Microbial Genomics Programme PELICAN, (ANR-09-GENM-030), the European Union's Seventh Framework Programmes (FP7) MicroB3 and MaCumBa (287589 and 311975, respectively) and the National Science Foundation grant (MCB-0843664).

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