Cyber-T pipeline

Cyber-T specifications

Information


Unique identifier OMICS_15281
Name Cyber-T
Interface Web user interface
Restrictions to use None
Programming languages Javascript, Python, R
Database management system PostgreSQL
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Pierre Baldi <>

Additional information


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Information


Unique identifier OMICS_15281
Name Cyber-T
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Requirements Lattice, vsn, multtest, geneplotter
Maintained Yes

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Documentation


Maintainer


  • person_outline Pierre Baldi <>

Additional information


A registration is needed to access to tools.

Publications for Cyber-T

Cyber-T citation

2015
PMCID: 4391502

[…] testing for this alternative analysis of the in vivo mtn-007 data was performed via a linear fit model using the limma package (smyth, 2005), with the same significance criteria used for cyber-t. the resulting gene lists greatly overlapped with the cyber-t results. for simplicity, the numbers of induced and suppressed genes reported in ‘results’ are based on the cyber-t analysis. […]

Cyber-T institution(s)
Department of Computer Science and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA
Cyber-T funding source(s)
National Institutes of Health (NIH) (LM010235-01A1 and 5T15LM007743).

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