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CycSim specifications

Information


Unique identifier OMICS_05181
Name CycSim
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for CycSim

CycSim citations

 (2)
library_books

Construction and completion of flux balance models from pathway databases

2012
Bioinformatics
PMCID: 3268246
PMID: 22262672
DOI: 10.1093/bioinformatics/btr681

[…] , WEBcoli () (only for E.coli) and Model SEED (). The capabilities of these systems are as follows. Ability to model essential genes and reactions: COBRA, FASIMU, BioMet, SimPheny, Acorn, Model SEED, CycSim, MetaFlux. Flux variability analysis: COBRA, FASIMU, Acorn. Inference of reactome and metabolic pathways from genome: Model SEED, Pathway Tools. Gap-filling (): Model SEED, COBRA, MetaFlux. Mul […]

library_books

Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface

2011
BMC Bioinformatics
PMCID: 3116490
PMID: 21609434
DOI: 10.1186/1471-2105-12-196

[…] ne or two linear programming optimizations for each reaction in the model. All of the gene names in the model are linked to Tuberculist [], a functional genomics portal dedicated to Mycobacteria. The CycSim [] system allows the computation of the maximal theoretical flux towards selected metabolites and does not implement the iterative protocols described above. However, it implements a sophistica […]


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CycSim institution(s)
CEA, DSV, IG, Genoscope, UMR 8030, Evry, France

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