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CyNetworkBMA specifications

Information


Unique identifier OMICS_10583
Name CyNetworkBMA
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Requirements
Cytoscape, networkBMA, Rserve, igraph
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Maciej Fronczuk

Publication for CyNetworkBMA

CyNetworkBMA citations

 (2)
library_books

GUIdock VNC: using a graphical desktop sharing system to provide a browser based interface for containerized software

2017
GigaScience
PMCID: 5530313
PMID: 28327936
DOI: 10.1093/gigascience/giw013

[…] racted a subset of 84 genes that belong to 21 cancer-related pathways (see Supplementary Table 12 in Klijn et al. []). We applied the ScanBMA [] gene network inference algorithm as implemented in the CyNetworkBMA app from within the GUIdock-VNC container.We show that we get identical results after deploying the package across different browsers on different operating systems. Fig.  shows screensho […]

library_books

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

2016
PLoS One
PMCID: 4821530
PMID: 27045593
DOI: 10.1371/journal.pone.0152686

[…] We deployed the CyNetworkBMA GUIdock package and applied it to three different datasets of biological relevance: RNAseq data across human cancer cell lines [], yeast time series gene expression data [] and DREAM4 sim […]


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CyNetworkBMA institution(s)
Institute of Technology, University of Washington, Tacoma, WA, USA
CyNetworkBMA funding source(s)
National Institutes of Health [R01 GM084163, 3R01 GM084163-02S2, R01 HD54511, R01 HD070936, U54 HL127624]; Institute of Translational Health Sciences (ITHS) eScience Seed Grant at University of Washington; Microsoft Azure for Research Award; Science Foundation Ireland ETS Walton visitor award 11/W.1/I207

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