CyNetworkBMA statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CyNetworkBMA

Tool usage distribution map

This map represents all the scientific publications referring to CyNetworkBMA per scientific context
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Associated diseases


Popular tool citations

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CyNetworkBMA specifications


Unique identifier OMICS_10583
Name CyNetworkBMA
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Cytoscape, networkBMA, Rserve, igraph
Maintained Yes


No version available


  • person_outline Maciej Fronczuk

Publication for CyNetworkBMA

CyNetworkBMA citations


GUIdock VNC: using a graphical desktop sharing system to provide a browser based interface for containerized software

PMCID: 5530313
PMID: 28327936
DOI: 10.1093/gigascience/giw013

[…] racted a subset of 84 genes that belong to 21 cancer-related pathways (see Supplementary Table 12 in Klijn et al. []). We applied the ScanBMA [] gene network inference algorithm as implemented in the CyNetworkBMA app from within the GUIdock-VNC container.We show that we get identical results after deploying the package across different browsers on different operating systems. Fig.  shows screensho […]


GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research

PLoS One
PMCID: 4821530
PMID: 27045593
DOI: 10.1371/journal.pone.0152686

[…] We deployed the CyNetworkBMA GUIdock package and applied it to three different datasets of biological relevance: RNAseq data across human cancer cell lines [], yeast time series gene expression data [] and DREAM4 sim […]

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CyNetworkBMA institution(s)
Institute of Technology, University of Washington, Tacoma, WA, USA
CyNetworkBMA funding source(s)
National Institutes of Health [R01 GM084163, 3R01 GM084163-02S2, R01 HD54511, R01 HD070936, U54 HL127624]; Institute of Translational Health Sciences (ITHS) eScience Seed Grant at University of Washington; Microsoft Azure for Research Award; Science Foundation Ireland ETS Walton visitor award 11/W.1/I207

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