cyto-Hubba statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Centrality exploration chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

cyto-Hubba specifications

Information


Unique identifier OMICS_12244
Name cyto-Hubba
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.6
Stability Stable
Requirements
Cytoscape
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Ming-Tat Ko <>

Information


Unique identifier OMICS_12244
Name cyto-Hubba
Interface Web user interface
Restrictions to use None
Input data Tab, Data with weight value or PSI
Computer skills Basic
Stability Stable
Maintained Yes

Download


Documentation


Maintainer


  • person_outline Ming-Tat Ko <>

Publication for cyto-Hubba

cyto-Hubba in publications

 (6)
PMCID: 5712783
PMID: 29225431
DOI: 10.6026/97320630013380

[…] functional enrichment of input seed sequences of mtb ta systems was carried out by string to identify significantly enriched go (gene ontology) biological processes and molecular functions., cyto-hubba [], a java plugin for cytoscape software, was employed to determine the hub proteins of ppi network of mtb ta systems. in this study, two centrality measurements, i.e. betweenness […]

PMCID: 5087837
PMID: 27483348
DOI: 10.1242/dmm.025528

[…] () of cytoscape software (), and the modules were functionally annotated with go terms and kegg pathways using the gostats bioconductor package (). the selected clusters were analysed using the cyto-hubba plugin () to determine the hubs and bottlenecks that represent the key regulatory genes within the network., this article is part of a special subject collection ‘spotlight on rat: […]

PMCID: 4783960
PMID: 26867193
DOI: 10.3390/ijms17020228

[…] edges per node, that is, the number of interacting partners. a node with high degree is called a network hub, which represents a protein with many interacting partner proteins [,]. here, we used the cyto-hubba (hub objects analyzer; taipei, taiwan) plug-in to provide several topological analysis algorithms which included degree calculation for cytoscape to explore important nodes/hubs […]

PMCID: 3849475
PMID: 24268016
DOI: 10.1186/1471-2164-14-S4-S1

[…] v . to identify the bridge nodes based on the betweenness, we adopted the method above used to determine hubs. we first calculated the betweenness using algorithms implemented in the cytoscape plugin cyto-hubba (v. 1.6) [] and then drew the betweenness distribution to find the point that the distribution begins to reach its asymptote. the nodes, including drugs and genes, with a betweenness higher […]

PMCID: 3641112
PMID: 23650531
DOI: 10.1371/journal.pone.0062817

[…] the interaction information was obtained using literature search, information from knowledge base databases such as mips, dips, hprd and ingenuity systems , . networks were analyzed using the cyto-hubba plug-in for cytoscape 2.8 platform to identify network hubs and bottlenecks, which may represent the key regulatory nodes in the network . the network consisting of the top 20 focus gene […]


To access a full list of publications, you will need to upgrade to our premium service.

cyto-Hubba institution(s)
Department of Computer Science and Information Engineering, Nanhua University, Chiayi County, Taiwan; Institute of Information Science, Academia Sinica, Taipei, Taiwan; Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Taiwan; Institute of Fisheries Science, College of Life Science, National Taiwan University, Taipei, Taiwan; Department of Computer Science and Information Engineering, National Central University, Taoyuan, Taiwan; Research Center of Information Technology Innovation, Academia Sinica, Taipei, Taiwan
cyto-Hubba funding source(s)
Ministry of Science and Technology (MOST), Taiwan, for financially supporting this research through MOST 97-2221-E-008-048, MOST 100-2628-E-001 -007 -MY3 and MOST 103-2311-B-001 -033 -MY3, MOST 101-2321-B-001-043-MY2 and MOST 102-2811-B-001-046.

cyto-Hubba reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review cyto-Hubba