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Cytochrome P450 Homepage specifications

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Unique identifier OMICS_26132
Name Cytochrome P450 Homepage
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline David Nelson

Publication for Cytochrome P450 Homepage

Cytochrome P450 Homepage citations

 (12)
library_books

Whole genome and transcriptome analysis reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus

2018
BMC Genomics
PMCID: 5946483
PMID: 29747580
DOI: 10.1186/s12864-018-4739-1

[…] identified by SignalP 4.1 and TMHMM 2.0 []. Core secondary metabolite (SM) genes and clusters were initially identified using antiSMASH. CYPs genes were identified with HMMER and then named using the cytochrome P450 homepage []. […]

library_books

De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses

2018
PMCID: 5845502
PMID: 29682127
DOI: 10.1155/2018/1857170

[…] the cytochrome P450 monooxygenases superfamily were selected and aligned to fungi P450 sequences. The detected CYPs were named after the nomenclature in the P450 database, which could be found at the Cytochrome P450 homepage (http://drnelson.uthsc.edu/CytochromeP450.html) [] or the Cytochrome P450 Engineering Database (https://cyped.biocatnet.de/) []. P450s that showed less than 40% identity were […]

library_books

Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice

2018
BMC Genomics
PMCID: 5764023
PMID: 29320982
DOI: 10.1186/s12864-017-4425-8

[…] ntbiology.msu.edu/). We identified OsCYPs according to the following steps: Firstly, the CYP protein sequences of Arabidopsis and wild rice were retrieved from TAIR (https://www.Arabidopsis.org/) and Cytochrome P450 Homepage, respectively. The full-length CYP sequences were separately aligned for each species with MEGA 6.0 software (http://megasoftware.net/), and the alignments were used to constr […]

call_split

The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis

2017
Nat Commun
PMCID: 5303825
PMID: 28165039
DOI: 10.1038/ncomms14153
call_split See protocol

[…] Over 400 putative CYP716 amino acid sequences from over 200 plant species spanning the whole plant kingdom () were collected from public databases, namely the Cytochrome P450 Homepage (http://drnelson.uthsc.edu/cytochromeP450.html), the PhytoMetaSyn medicinal plant transcriptomics resources, Phytozome (http://phytozome.jgi.doe.gov) and 1KP transcriptome res […]

library_books

Identification and analysis of CYP450 genes from transcriptome of Lonicera japonica and expression analysis of chlorogenic acid biosynthesis related CYP450s

2017
PeerJ
PMCID: 5600180
PMID: 28924501
DOI: 10.7717/peerj.3781

[…] L.┬ájaponica CYP450s were classified into different families and subfamilies according to the sequence similarity using sequences from Cytochrome P450 Homepage as reference sequences. If the amino acid sequences of L.┬ájaponica CYP450s showed >40%, >55%, or >95% sequence similarity with reference sequences, they were classified into t […]

library_books

Molecular evolutionary dynamics of cytochrome P450 monooxygenases across kingdoms: Special focus on mycobacterial P450s

2016
Sci Rep
PMCID: 5018878
PMID: 27616185
DOI: 10.1038/srep33099

[…] Identification of P450 family members was carried out using the methodology described elsewhere. Briefly, a representative P450 for each of the families was taken from mycobacterial species from the Cytochrome P450 Homepage and protein BLAST was performed at KEGG against prokaryote genomes. The resulting hit proteins were sorted into P450 families according to the International P450 Nomenclature […]


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Cytochrome P450 Homepage institution(s)
Department of Molecular Sciences, University of Tennessee, Memphis, TN, USA

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