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CytoCluster

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Allows users to identify protein complexes or functional modules. CytoCluster is a plugin that integrates several clustering algorithms: (1) BinGO; (2) IPC-MCE; (3) DCU; (4) ClusterONE; (5) IPCA; (6) OH-PIN; and (7) HC-PIN. Users can select clustering algorithm in accordance with its requirements. BinGO serves to detect what Gene Ontology (GO) are overrepresented in a subgraph of a biological network or in a set of genes.

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CytoCluster versioning

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CytoCluster classification

CytoCluster specifications

Software type:
Toolkit/Suite
Restrictions to use:
None
Programming languages:
Java
Version:
2.1.0
Requirements:
Cytoscape
Maintained:
Yes
Interface:
Graphical user interface
Operating system:
Unix/Linux
Computer skills:
Medium
Stability:
Stable

CytoCluster support

Documentation

Maintainers

  • Fang-Xiang Wu <>
  • Min Li <>
  • Yu Tang <>
  • Dongyan Li <>

Credits

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Publications

Institution(s)

School of Information Science and Engineering, Central South University, Changsha, China; School of software, Central South University, Changsha, China; Department of Mechanical Engineering and Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada

Funding source(s)

Supported in part by the National Natural Science Foundation of China under Grants (No. 61622213, No. 61370024 and No. 61420106009).

Link to literature

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