Cytoscape App Store statistics

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Cytoscape App Store specifications


Unique identifier OMICS_17816
Name Cytoscape App Store
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes


  • person_outline Alexander Pico

Publication for Cytoscape App Store


Cytoscape App Store

2013 Bioinformatics
PMCID: 3654709
PMID: 23595664
DOI: 10.1093/bioinformatics/btt138

Cytoscape App Store citations


Special Protein Molecules Computational Identification

Int J Mol Sci
PMCID: 5855758
PMID: 29439426
DOI: 10.3390/ijms19020536

[…] ssue is a popular clustering tool which integrates six clustering algorithms and BinGO function. Since it was established in July 2013, CytoCluster has been downloaded more than 11,200 times from the Cytoscape App Store and has been applied to different biological networks analyses. […]


CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API

PMCID: 4670004
PMID: 26672762
DOI: 10.5256/f1000research.7270.r9848

[…] CyREST software is available from the Cytoscape App Store: Latest source code of cyREST: Full REST API v1 document: Py2cytoscape […]


Comprehensive Reconstruction and Visualization of Non Coding Regulatory Networks in Human

Front Bioeng Biotechnol
PMCID: 4261811
PMID: 25540777
DOI: 10.3389/fbioe.2014.00069

[…] ed ncINetView, which allows to: (i) build a network annotated with all known ncRNAs and associated diseases by accessing to only one database, and (ii) use all visual and mining features available in Cytoscape app store to analyze it. At, users can search in ncRNA-DB, export the results in text format, download the command-line interface, Java API, the app […]


Cytoscape tools for the web age: D3.js and Cytoscape.js exporters

PMCID: 4264639
PMID: 25520778
DOI: 10.5256/f1000research.4824.r5313

[…] new wiki page for step-by-step instruction how to reproduce the Figure 5.  It is linked from the descriptions for the figure.Built a minor updated version 1.0.2 of D3.js Exporter and deployed to the Cytoscape App Store: Fixed problems in the examples.  One of the reviewers reported problems in the examples page to show the D3.js exports.  We have update […]


GASOLINE: a Cytoscape app for multiple local alignment of PPI networks

PMCID: 4197741
PMID: 25324964
DOI: 10.5256/f1000research.4854.r5404

[…] es that can be directly used to run the algorithm, can be downloaded from the GASOLINE website: GASOLINE plugin can also be downloaded from the Cytoscape App Store: our website, there is also a complete documentation on the GASOLINE plugin, with more details about the format of input and output data, […]


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Cytoscape App Store institution(s)
Gladstone Institutes, San Francisco, CA, USA; The Donnelly Centre, University of Toronto, Toronto, Ontario, Canada
Cytoscape App Store funding source(s)
This work is supported by a grant from the Biomedical Technology, Bioinformatics and Computational Biology (BBCB) at National Institute of General Medical Sciences (NIGMS), National Institutes of Health (NIH) [P41 GM103504].

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