CytoSure Interpret Software specifications

Information


Unique identifier OMICS_00718
Name CytoSure Interpret Software
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
License Commercial
Computer skills Advanced
Stability Stable
Maintained Yes

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CytoSure Interpret Software in publications

 (21)
PMCID: 5874392
PMID: 29619236
DOI: 10.1038/hgv.2018.9

[…] scanned on a microarray scanner with 3 mm resolution, and initial data analysis was performed with the feature extraction software v 11.5.1.1 (agilent technologies), followed by analysis with the cytosure interpret software (oxford gene technology)., the human isl1 protein was aligned against homologs in different species using clustalw v.2.1 (http://www.genome.jp/tools/clustalw/) […]

PMCID: 5834248
PMID: 29541405
DOI: 10.18632/oncotarget.24340

[…] calculated by dividing the normalized intensity in the sample by the mean intensity across the reference sample. the log2 ratios were plotted and segmented by circular binary segmentation in the cytosure interpret software (oxford gene technology, oxfordshire, uk). oligonucleotide probe positions were annotated to the human genome assembly hg19 (www.genome.ucsc.edu)., sanger sequencing […]

PMCID: 5848380
PMID: 29272887
DOI: 10.1093/ajcp/aqx139

[…] agilent g2565ca scanner, and images were quantified using agilent feature extraction software (version 10.7.3.1) (agilent, santa clara, ca, usa)., array analysis was performed as described. briefly, cytosure interpret software, version 020022 (ogt), was used for analysis of array data. deletion or duplication calls were made using the log2 ratio of each segment that has a minimum of four probes. […]

PMCID: 5732689
PMID: 29262523
DOI: 10.18632/oncotarget.21800

[…] calculated by dividing the normalized intensity in the sample by the mean intensity across the reference sample. the log2 ratios were plotted and segmented by circular binary segmentation in the cytosure interpret software (oxford gene technology, oxfordshire, uk). oligonucleotide probe positions were annotated to human genome assembly hg19., nine variants (shared sequence variants in family […]

PMCID: 5588601
PMID: 28912834
DOI: 10.1186/s13039-017-0336-2

[…] washing the array was analyzed with the agilent scanner and feature extraction software (agilent technologies, santa clara, ca) and text file outputs from the quantization analysis were imported to cytosure interpret software (oxford gene technology) for copy number analysis., fish analyses of the 10p15.3 region was performed according to a standard protocol, using bac clone rp11–62o22. […]


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