CyTRANSFINDER statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CyTRANSFINDER

Tool usage distribution map

This map represents all the scientific publications referring to CyTRANSFINDER per scientific context
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Associated diseases


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CyTRANSFINDER specifications


Unique identifier OMICS_27652
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.75
Stability Stable
Maintained Yes




No version available


  • person_outline Stefano DiCarlo

Additional information

Publication for CyTRANSFINDER



Microarray profiling of miRNA and mRNA expression in Rag2 knockout and wild type mouse spleens

Sci Data
PMCID: 5759371
PMID: 29313843
DOI: 10.1038/sdata.2017.199

[…] ta. These databases include but are not limited to, DAVID, PANTHER, Gene Set Expression Analysis (GSEA), STRING, and Cytoscape. In addition, different analysis tools such as Bingo, ClueGO, CluePedia, cyTransFinder, GeneMania, MetDisease, MetScape, ReactomeFIPlugin as well as commercially available software such as QIAGEN's Ingenuity Pathway Analysis (IPA), could all be of use in analysing and inte […]


Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study

PLoS One
PMCID: 5001701
PMID: 27564214
DOI: 10.1371/journal.pone.0161771

[…] ng the interactions between miRNAs identified in the VMTs list in and all genes identified during the initial literature search as being involved in BOS (see ). The network was constructed using the CyTransfinder Cytoscape plugin []. Interestingly, 17 out of the 29 identified miRNAs were involved in the regulation of 14 out of the 27 identified genes. Even more interestingly, none of the identifi […]

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CyTRANSFINDER institution(s)
Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy; Molecular Biotechnology Center, Torino, Italy; Department Molecular Biotechnology and Health Sciences, University of Torino, Torino, Italy; Center for Complex Systems in Molecular Biology and Medicine, Torino, Italy
CyTRANSFINDER funding source(s)
Supported by grants from Compagnia di San Paolo, Torino (IT), grants no. 2008.1054(DT), AIRC2010, 2013 (IG2010-10104DT; IG2013-14201DT), by Fondazione Cassa di Risparmio Torino CRT, Torino (IT), grant no. 2014.1085DT and by Italian Ministry of Education, University and Research (IT), grant no. PRIN 2010, MIND.


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