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Unique identifier OMICS_06880
Name D-score

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Publication for D-score

D-score citations

 (7)
library_books

Characterisation of the circulating acellular proteome of healthy sheep using LC MS/MS based proteomics analysis of serum

2017
Proteome Sci
PMCID: 5466729
PMID: 28615994
DOI: 10.1186/s12953-017-0119-z

[…] using the decoy hit distribution. All validation thresholds are listed in the Certificate of Analysis available in the data files. Post-translational modification localisations were scored using the D-score [] and the phosphoRS score [] with a threshold of 95.0 as implemented in the compomics-utilities package []. Protein identification reports were exported in .xlsx format for evaluation and cur […]

library_books

Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae)

2017
PMCID: 5447515
PMID: 28580409
DOI: 10.1016/j.dib.2017.04.058

[…] ribution. All validation thresholds are listed in the Certificate of Analysis and are available in and for all databases searched. Post-translational modification localizations were scored using the D-score and the A-score with a threshold of 95.0 as implemented in the compomics-utilities package . An A-score above 95.0 was considered a confident localization. The mass spectrometry data along w […]

call_split

Novel proteins from proteomic analysis of the trunk disease fungus Lasiodiplodia theobromae (Botryosphaeriaceae)

2017
PMCID: 5802045
PMID: 29450146
DOI: 10.1016/j.biopen.2017.03.001
call_split See protocol

[…] dation thresholds are listed in the Certificate of Analysis available in for all databases searched in the Data in Brief article . Post-translational modification localizations were scored using the D-score and the A-score with a threshold of 95.0 as implemented in the compomics-utilities package .The mass spectrometry raw data files along with the identification results have been deposited to […]

library_books

The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli

2016
Front Microbiol
PMCID: 4955376
PMID: 27493641
DOI: 10.3389/fmicb.2016.01103

[…] ization. Peptide Spectrum Matches (PSM), peptides and proteins were validated at 1% FDR estimated using the decoy hit distribution. Post-translational modification localizations were scored using the D-score (Vaudel et al., ) as implemented in the compomics-utilities package (Barsnes et al., ).The mass spectrometry data, along with the PeptideShaker identification results, have been deposited to t […]

library_books

Exploring the potential of public proteomics data

2015
Proteomics
PMCID: 4738454
PMID: 26449181
DOI: 10.1002/pmic.201500295

[…] alizing PTMs are essential tasks in proteomics data analysis , and for this purpose multiple PTM localization scores have been developed , for example A‐score , PTM score , MD‐score , phosphoRS , and D‐score . Setting a threshold for these scores is, however, challenging, and solutions have only recently been established , . If such approaches were not applied in the original analysis, it is worth […]

call_split

Honey Bee Infecting Lake Sinai Viruses

2015
Viruses
PMCID: 4488739
PMID: 26110586
DOI: 10.3390/v7062772
call_split See protocol

[…] tches (PSMs), peptides and proteins were validated at a 1.0% False Discovery Rate (FDR) estimated using the decoy hit distribution. Post-translational modification localizations were scored using the D-score [] and the phosphoRS score [] as implemented in the compomics-utilities package []. The mass spectrometry data along with the identification results have been deposited to the ProteomeXchange […]


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D-score institution(s)
Leibniz-Institut für Analytische Wissenschaften – ISAS – eV, Dortmund, Germany

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