Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 130
Release date: Aug 3 2018
Last update date: Nov 28 2018
Access: Public
Diseases: Carcinoma, Non-Small-Cell Lung, Neoplasms
Dataset link Identification of relationships between Molecular and Imaging Phenotypes in Non-small cell lung cancer using radiogenomics Map

Experimental Protocol


We studied 130 cases of NSCLC with CT, PET/CT and RNASeq data under IRB approval from Stanford University and the Veterans Administration Palo Alto Health Care System. The collection of tissue samples consisted of a distribution of poorly- to well-differentiated adenocarcinomas and squamous cell cancers. The surgeon had removed necrotic debris during excision and sampled cavitary lesions to include as much solid component as practical. Then, from the excised tumor, he cut a 3 to 5 mm thick slice along its longest axis, and froze it within 30 minutes of excision. We retrieved the frozen tissue and extracted the RNA that was then processed by centrillion genomic services using Illumina Hiseq 2500

Repositories


GEO

GSE103584

ENA

SRP117020

BioProject

PRJNA401995

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Contact


Shaimaa Bakr