d2-tools statistics

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d2-tools specifications


Unique identifier OMICS_02621
Name d2-tools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
License Artistic License version 2.0, GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for d2-tools

d2-tools in publication

PMCID: 4619416
PMID: 26496746
DOI: 10.1186/s12864-015-2063-6

[…] matrices and the corresponding principal coordinates were calculated on the taxa by sample table using qiime [] and plotted using r and the ggplot2 package. euclidean distances generated by the d2-tools k-mer profiling software were also used as input for principal coordinates calculations and corresponding visualizations using qiime, r and ggplot2. permutational multivariate analysis […]

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d2-tools institution(s)
School of Information Science and Technology, Xiamen University, Fujian, China; Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA

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