d2-tools specifications


Unique identifier OMICS_02621
Name d2-tools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python, R
License Artistic License version 2.0, GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


Publication for d2-tools

d2-tools citation


Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

BMC Genomics
PMCID: 4619416
PMID: 26496746
DOI: 10.1186/s12864-015-2063-6

[…] tance matrices and the corresponding principal coordinates were calculated on the taxa by sample table using Qiime [] and plotted using R and the ggplot2 package. Euclidean distances generated by the d2-Tools k-mer profiling software were also used as input for principal coordinates calculations and corresponding visualizations using Qiime, R and ggplot2. Permutational multivariate analysis of var […]

d2-tools institution(s)
School of Information Science and Technology, Xiamen University, Fujian, China; Molecular and Computational Biology, University of Southern California, Los Angeles, CA, USA

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