Computational protocol: Comparison of the genotypic and phenotypic properties of HIV-1 standard subtype B and subtype B/B′ env molecular clones derived from infections in China

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Protocol publication

[…] Sequences were aligned using the ClustalW program in MEGA 6.06 software. Phylogenetic analysis was conducted using the neighbor-joining method. Glycosylation sites were predicted with the HIV-1 database online program N-GlycoSite (http://www.hiv.lanl.gov/content/sequence/GLYCOSITE/glycosite.html). […]

Pipeline specifications

Software tools Clustal W, MEGA
Application Phylogenetics
Organisms Human immunodeficiency virus 1, Homo sapiens, Viruses
Diseases HIV Infections