Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 8
Release date: Nov 1 2017
Last update date: Nov 27 2018
Access: Public
Diseases: Hepatitis, Hepatitis C, Carcinoma, Hepatocellular, Infection
Chemicals: Zinc
Computational protocol: Bowtie, TopHat, Cufflinks
Dataset link The hepatitis C viral protein NS5A stabilizes growth-regulatory human transcripts

Experimental Protocol


Calculate mRNA decay rate by examining RNA-seq expression levels of 2 samples (Huh and Huh-HCV) at 3 time points (0h, 3h, and 6h) after transcription arrest. RNA-IP followed by RNA-seq on 2 samples (Huh and Huh-HCV).

Repositories


GEO

GSE102910

ENA

SRP115925

BioProject

PRJNA399262

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