D3E specifications

Information


Unique identifier OMICS_08955
Name D3E
Alternative name Discrete Distributional Differential Expression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data D3E takes a read-count table as an input, with rows and columns corresponding to transcripts and cells, respectively. The user should split the columns into two or more groups by providing cell labels in the input file. If there are more than two groups of cells, they must be compared one pair at a time.
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Martin Hemberg <>

Information


Unique identifier OMICS_08955
Name D3E
Alternative name Discrete Distributional Differential Expression
Interface Web user interface
Restrictions to use None
Input data D3E takes a read-count table as an input, with rows and columns corresponding to transcripts and cells, respectively. The user should split the columns into two or more groups by providing cell labels in the input file. If there are more than two groups of cells, they must be compared one pair at a time.
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Martin Hemberg <>

Publication for Discrete Distributional Differential Expression

D3E institution(s)
Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, UK; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, UK

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