Dataset features

Specifications


Application: SNP array data analysis, aCGH data analysis
Number of samples: 172
Release date: Sep 8 2009
Last update date: Feb 19 2014
Access: Public
Diseases: Breast Neoplasms, Carcinoma, Neoplasms, Inflammatory Breast Neoplasms
Chemicals: Calcium, Estrogens, Progesterone
Dataset link CAMK1D amplification implicated in epithelial-mesenchymal transition in basal-like breast cancer (aCGH)

Experimental Protocol


Overall design: cDNA microarrays from the Stanford Functional Genomics Facility were used to carry out array-based Comparative Genomic Hybridization (array CGH) analysis of 172 human breast tumor specimens, in comparison to normal female DNA. Map positions for arrayed cDNA clones were assigned using the NCBI genome assembly, accessed through the UCSC genome browser database (NCBI Build 36). The CLuster Along Chromosomes (CLAC) method was used to call DNA gains and losses. Set of arrays that are part of repeated experiments Keywords: Biological Replicate Biological Replicate Computed

Repositories


GEO

GSE12813

ArrayExpress

E-GEOD-12813

BioProject

PRJNA114177

Download


Contact


Jonathan Pollack