Computational protocol: Pathology caused by persistent murine norovirus infection

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Protocol publication

[…] Viral nucleotide sequences obtained (GenBank accession nos. KF113527 and KF113526 for MNV-O1 and MNV-O7, respectively) and their predicted amino acid sequences were aligned using Clustal W with full-length MNV genomic or protein sequences drawn from GenBank. A PhyML () phylogenetic tree was constructed using SeaView software with 100 bootstrap repetitions (; ). The tree was then edited using FigTree software (; Andrew Rambaut, Institute of Evolutionary Biology, University of Edinburgh, UK). […]

Pipeline specifications

Software tools Clustal W, PhyML, SeaView, FigTree
Application Phylogenetics
Organisms Mus musculus, Norovirus GV
Diseases Infection, Liver Diseases