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[…] hagy. Autophagy is a catabolic process that involves transporting cellular components to the vacuole for further degradation and nutrient recycling []. No enriched terms were identified at 24 hap, but 368 enriched terms were identified when comparing pollinated to unpollinated (P/U) corollas at any time (12, 18, and 24 h). Enriched terms consisted of sucrose metabolic process, response to chitin, and response to wounding. The number of GO terms (557 in total of which 508 were unique) reflects the breadth of changes that occur between 12 and 24 hap in corolla tissue (Additional file )., To identify the molecular pathways associated with pollination-induced corolla senescence, the significant DESeq2 and WGCNA genes were searched against A. thaliana proteins using BLASTx []. Top BLASTx hits were considered as the putative A. thaliana orthologs (Additional file ). These hits were mapped to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. A total of 15 unique, enriched KEGGs were identified (Table  and Additional file ). The KEGG pathways provided insight into potential biological pathways that function in the corollas of pollinated flowers. For example, eight of the KEGGs were involved in metabolism, including carbohydrate, energy, and lipid metabolism as well as the metabolism of terpenoids and polyketides. Other KEGGs were categorized under transport and catabolism, translation, signal transduction, and environmental adaptation.Table 2 aFalse discovery […]

Pipeline specifications

Software tools DESeq2, WGCNA, BLASTX
Chemicals Carbon