Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 24
Release date: Apr 25 2009
Last update date: Mar 21 2012
Access: Public
Chemicals: Dopamine
Dataset link Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid

Experimental Protocol


Biological material for microarray experiments was prepared under two dayly photoperiodic regimes both at constant temperature of 18°C: i) “Short Night” (SN) at 16h of light and ii) “Long Night” (LN) at 12h of light to induce the production of sexual morphs. To initiate the experiment, two groups of 105 L3 larvae were placed either under SN or LN condition. This corresponds to generation G0. At the middle of the photophase, 25 individual were frozen when they had reached both the L4 and the wingless adult (WA) stages, in the two photoperiod conditions. The 55 remaining WA individuals (still divided in two groups) were left on 55 plants to lay their offspring: one larva of the 1st stage (L1) was kept per WA. This larva was selected among the 20 first born larvae. This is the generation G1. At the middle of the photophase, 25 individual were frozen when they had reached both the L2 and the L4 stages, in the two photoperiodic conditions. Thus, 25 individuals from 4 different stages (L4-G0, WA-G0, L2-G1 and L4-G1) were collected in the two photoperiod conditions with 3 biological replicates, forming the 24 samples used for microarray experiments. RNAs from heads of aphids from the two photoperiodic conditions were hybridized one against the other for each stage with a dye-swap.The experimental design is thus 24 arrays which corresponds to the described samples of that series.

Repositories


GEO

GSE15776

ArrayExpress

E-GEOD-15776

BioProject

PRJNA116845

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Contact


Denis TAGU

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