Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 26
Release date: Apr 25 2018
Last update date: Nov 19 2018
Access: Public
Dataset link Topological demarcation by HMGB2 is disrupted early upon senescence entry and induces CTCF clustering across cell types [RNA-seq]

Experimental Protocol


Gene expression profiles generated by sequencing total (ribodepleted) RNA from HUVEC (D1-D3), polyA-selected or nascent (factory) RNA from IMR90 (I10 and I79), polyA-selected RNA from MSC (donors A-D), or polyA-selected RNA from control (NTC) and HMGB2-knockdown (HMGB2-KD) HUVEC.

Repositories


GEO

GSE98440

ENA

SRP106038

BioProject

PRJNA385098

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Contact


Milos Nikolic