Computational protocol: Molecular Detection of Torque Teno Sus Virus and Coinfection with African Swine Fever Virus in Blood Samples of Pigs from Some Slaughterhouses in Nigeria

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Protocol publication

[…] The chromatograms were edited in SeqMan (Lasergene 9, DNASTAR Inc., Madison, USA). The edited sequences were subsequently aligned by ClustalW in BioEdit The phylogenetic relationship among the TTSuV1a and TTSuV1b sequences from this study was compared to previously published sequences available from GenBank using Mega 6.0 [] for the construction of a phylogenetic tree using the Maximum-Likelihood algorithm with the Tamura 3-parameter model substitution with a bootstrap value of 1000. […]

Pipeline specifications

Software tools Clustal W, BioEdit, MEGA
Application Phylogenetics
Organisms Torque teno sus virus 1a, Sus scrofa, Sus scrofa domesticus
Diseases African Swine Fever