DADA specifications

Information


Unique identifier OMICS_01117
Name DADA
Alternative name Divisive Amplicon Denoising Algorithm
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Amplicon sequencing data.
Input format FASTQ
Biological technology Illumina
Operating system Unix/Linux
Programming languages C, MATLAB, Perl
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Bacillus subtilis
    • Escherichia coli
    • Helicobacter pylori
    • Mycobacterium tuberculosis
    • Mycoplasma pneumoniae
    • Staphylococcus aureus

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Maintainers


  • person_outline Benjamin Callahan <>
  • person_outline Michael Rosen <>

Additional information


https://github.com/mjrosen/dada

Publication for Divisive Amplicon Denoising Algorithm

DADA institution(s)
Department of Statistics, Stanford University, Stanford, CA, USA; Second Genome, South San Francisco, CA, USA; Department of Applied Physics, Stanford University, Stanford, CA, USA
DADA funding source(s)
Supported by the NSF (DMS-1162538), the NIH (R01AI112401) and the Samarth Foundation (Stanford Microbiome Seed Grant).

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