DALIGNER pipeline

DALIGNER specifications

Information


Unique identifier OMICS_08897
Name DALIGNER
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Pacific Biosciences, Oxford Nanopore
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


DALIGNER IN pipeline

2017
PMCID: 5416750
PMID: 28062856
DOI: 10.1093/nar/gkw1328

[…] as second step in the porefume pipeline. nanocorrect has been applied previously to increase the nanopore read accuracy from 80.5% to 95.9% (20). the algorithm identifies overlapping reads using daligner (33) and calculates a consensus sequence, using partial-order alignment (poa) software (34). two rounds of error correction where conducted by the porefume pipeline. finally, the error […]

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