DaliLite pipeline

DaliLite specifications

Information


Unique identifier OMICS_06825
Name DaliLite
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_06825
Name DaliLite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DaliLite

DaliLite IN pipelines

 (3)
2014
PMCID: 3994108
PMID: 24752422
DOI: 10.1371/journal.pone.0095633

[…] model several regions corresponding to different domains of all three viral polypeptides (gag, pol, and env). pairwise structural alignments and structural superimposition were performed using the dalilite server [32]. models and figures were drawn using pymol (delano scientific)., the long terminal repeat polymorphic sequences for each koala were analyzed for putative transcription binding […]

2012
PMCID: 3374372
PMID: 22715312
DOI: 10.6026/97320630008420

[…] minimized by charmm which yielded the energy value -2.14 kcal/mol from the previous energy value of -1.04 kcal/mol. the backbone structure of modeled protein is threaded with chain-a of template by dalilite. the superimposition showed rmsd value of 0.2ao with 298 aligned residue and 91% identity in their alignment. the modeled structure was steriochemically validated by procheck. ramachandran […]

2011
PMCID: 3155347
PMID: 21845074
DOI: 10.3390/ijms12074214

[…] and needed to choose the best candidates based on an energy function., the arabian camel hspa6 protein 3d structure was aligned with the crystal structure of other mammalian hsps using predict dalilite server with a pairwise comparison between two proteins structures at a time. the heuristic algorithm was used to describe random structural alignments of proteins with different folds […]

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