DARIO statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DARIO
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Tool usage distribution map

This map represents all the scientific publications referring to DARIO per scientific context
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Associated diseases

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Popular tool citations

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DARIO specifications

Information


Unique identifier OMICS_00356
Name DARIO
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Steve Hoffmann

Publication for DARIO

DARIO citations

 (5)
library_books

The discovery potential of RNA processing profiles

2017
Nucleic Acids Res
PMCID: 5814818
PMID: 29155959
DOI: 10.1093/nar/gkx1115

[…] h included the execution of Blockbuster (), took ∼15 min and used nearly 30 Gb of memory. Additionally, we compared the performance of SeRPeNT against the supervised version of BlockClust and against DARIO (), using a cross-fold validation approach (). Using small RNA-Seq data from MCF-7 cells () (GSM769510) for the three methods, SeRPeNT shows overall higher precision in all tested sncRNA familie […]

library_books

Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases

2017
Genes
PMCID: 5615367
PMID: 28925938
DOI: 10.3390/genes8090234

[…] of small RNA expression by means of NGS approaches, downstream data analysis might be performed using different tools: small RNA toolkit [], miRDeep [] and miRDeep2 [], miRanalyzer [,], SeqBuster [], DARIO [] UEA sRNA workbench [] and ShortStack []. In certain cases, some of these tools include other prediction tools for novel microRNAs or isoforms of miRNAs (isomiRs) quantification. However, they […]

library_books

miRDis: a Web tool for endogenous and exogenous microRNA discovery based on deep sequencing data analysis

2017
Brief Bioinform
PMCID: 5952930
PMID: 28073746
DOI: 10.1093/bib/bbw140

[…] ate (FDR), long running time or nonintuitive to use. For example, because of the common concern that multi-genome comparison normally requires significant long computing time, Web-based tools such as DARIO [], sRNAbench [] and Chimira [] limit the user submission by one sample per job and/or file upload size <500 MB or 1.6 GB, while the well-designed stand-alone packages, e.g. CAP-miRSeq [], requi […]

library_books

Computational Approaches for the Analysis of ncRNA through Deep Sequencing Techniques

2015
Front Bioeng Biotechnol
PMCID: 4453482
PMID: 26090362
DOI: 10.3389/fbioe.2015.00077

[…] ent length, cleavage specificity, and antisense transcription, CoRAL can effectively classify six distinct ncRNA classes among miRNAs and transposon-derived RNAs. Outperforming previous tools such as DARIO and miRDeep2, CoRAL provides the opportunity to annotate ncRNAs in other less well-characterized organisms.Another tool for ncRNA annotation in NGS data lacking reference genomes is the software […]

library_books

Revealing stable processing products from ribosome associated small RNAs by deep sequencing data analysis

2012
Nucleic Acids Res
PMCID: 3351166
PMID: 22266655
DOI: 10.1093/nar/gks020

[…] e clustering of the contigs not only clarifies the result list but also solves the problem of normalization of the read count. In existing pipelines for annotation of ncRNA deep-sequencing data, like DARIO (), the multiple matching reads are normalized by number of mappings. By employing the read name-based contig clustering the spurious read mappings are removed, thus such artificial normalizatio […]


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DARIO institution(s)
Interdisciplinary Center for Bioinformatics and Bioinformatics Group, Department of Computer Science, University Leipzig, Leipzig, Germany; LIFE, Leipzig Research Center for Civilization Diseases, University Leipzig, Leipzig, Germany
DARIO funding source(s)
LIFE - Leipzig Research Center for Civilization Diseases, Universität Leipzig. European Social Fund and the Free State of Saxony

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