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DARNED specifications


Unique identifier OMICS_05854
Alternative name DAtabase of RNa Editing
Restrictions to use None
Maintained Yes


  • Primates
    • Homo sapiens

Publication for DAtabase of RNa Editing

DARNED citations


The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes

Nucleic Acids Res
PMCID: 5210597
PMID: 28053160
DOI: 10.1093/nar/gkw1188

[…] esses. Examples include SNP2TFBS, a database of SNPs in predicted transcription factor binding sites (TFBSs); LincSNP, a database that links SNPs to long noncoding RNAs and their TFBSs; LNCediting, a database of RNA editing in lncRNAs, and POSTAR, a resource on post-transcriptional regulation by RNA-binding proteins.Major protein sequence databases include updates from UniProt and InterPro, the la […]


Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

PLoS Genet
PMCID: 3636048
PMID: 23637635
DOI: 10.1371/journal.pgen.1003470

[…] high frequency of Alu elements in transcribed regions of the human genome, which often occur in inverted pairs and thereby can form long RNA duplexes providing templates for ADARs .We used DARNED, a database of RNA editing sites in humans , to identify 2,941 A-to-I editing sites in mature lncRNA transcripts. As observed previously for mRNAs, most (82%) of the edited sites in lncRNAs occur within […]


Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

PMCID: 3233218
PMID: 22156726
DOI: 10.1093/pcp/pcr153

[…] assigned to annotated Arabidopsis genes, and hyperlinks to external information resources such as The Arabidopsis Information Resource (TAIR). The RNA-editing site on protein 3D structure is a unique database of RNA-editing sites found in plant organelle genes with the results mapped onto amino acid sequences and 3D structures (). Fig. 3Literature mining for gene associations is also an essential […]

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DARNED institution(s)
Biochemistry Department, University College Cork, Ireland

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