DASHR statistics

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Protocols

DASHR specifications

Information


Unique identifier OMICS_10542
Name DASHR
Alternative name Database of small human noncoding RNAs
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainers


  • person_outline Li-San Wang
  • person_outline Yuk Leung
  • person_outline DASHR Team

Additional information


The repository can also be reached at http://dashr2.lisanwanglab.org

Publications for Database of small human noncoding RNAs

DASHR citations

 (3)
library_books

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair

2018
Nat Commun
PMCID: 5803274
PMID: 29416038
DOI: 10.1038/s41467-018-02893-x

[…] t all miRNA reads. Those reads that did not map to miRNA hairpins were further filtered using samtools v1.3.1 to remove other small RNA genes, including tRNA, snRNA, snoRNA, and scRNA as annotated by DASHR and also annotated Y RNA and sRNA with ensembl reference release 85. The final remaining reads were considered non-miRNA small RNAs and only these were used for further analyses.21–23 nt reads w […]

library_books

Systematic comparison of small RNA library preparation protocols for next generation sequencing

2018
BMC Genomics
PMCID: 5799908
PMID: 29402217
DOI: 10.1186/s12864-018-4491-6

[…] r Arabidopsis RNA, the obtained sequences were trimmed for adapter sequences and were mapped to various databases. For human, the sequences were mapped to the database of small human non-coding RNAs (DASHR; downloaded on October 5, 2017) [], mirBase (for partial miRNA sequences), and the regulatory RNA database (http://www.regulatoryrna.org/database/piRNA/download/archive/v1.0/fasta/) for piRNA se […]

call_split

Small non coding RNA profiling in human biofluids and surrogate tissues from healthy individuals: description of the diverse and most represented species

2017
Oncotarget
PMCID: 5790449
PMID: 29423032
DOI: 10.18632/oncotarget.23203
call_split See protocol

[…] igned against human genomic sequence hg38 (GRCh38) using Bowtie2 v2.2.7 in default settings []. Reads alignment files were used to quantify the expression of ncRNA annotations from Gencode v24 [] and DASHR database []. The annotations with median reads greater than 20 were selected. Then, read counts were normalized by computing the library size factor []. The SVA [] was performed to correct the r […]

Citations

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DASHR institution(s)
Penn Neurodegeneration Genomics Center, Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Genomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
DASHR funding source(s)
Supported by the National Institute of General Medical Sciences (R01-GM099962); and the National Institute on Aging (U54- AG052427, U01-AG032984, U24-AG041689, UF1-AG047133, T32-AG00255).

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