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Data analysis software tools | qPCR analysis

Data analysis software for quantitative PCR analysis.

G T A T C G C T A
Monocle
Desktop

Monocle

Allows to analyze single-cell gene expression experiments. Monocle can realize…

Allows to analyze single-cell gene expression experiments. Monocle can realize differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. The…

qbase+
Desktop

qbase+

User-friendly software tool for qPCR data analysis. It's based on the…

User-friendly software tool for qPCR data analysis. It's based on the qBase and geNorm technologies and is fully MIQE-compliant. Whatever qPCR instrument or computer operating system, whatever…

HTqPCR
Desktop

HTqPCR

A package for the R statistical computing environment, to enable the processing…

A package for the R statistical computing environment, to enable the processing and analysis of qPCR data across multiple conditions and replicates. HTqPCR performs quality assessment, normalization,…

nondetects
Desktop

nondetects

Methods to model and impute non-detects in the results of qPCR experiments.

Methods to model and impute non-detects in the results of qPCR experiments.

Chainy
Web

Chainy

Provides systematic pipelines and steady criteria to process real-time PCR…

Provides systematic pipelines and steady criteria to process real-time PCR data. Chainy includes the calculation of efficiencies from raw data by kinetic methods, evaluation of the suitability of…

ReadqPCR
Desktop

ReadqPCR

Allows the user to read RT-qPCR data into R, deal with undetermined Cq values,…

Allows the user to read RT-qPCR data into R, deal with undetermined Cq values, find a suitable reference gene or genes for a given experiment using a method for optimal reference gene selection and…

NormqPCR
Desktop

NormqPCR

Provides tools for uploading RT-qPCR data into R, looks for the optimal…

Provides tools for uploading RT-qPCR data into R, looks for the optimal reference genes, and normalises the data using the ΔΔCq method. NormqPCR allows the user to read RT-qPCR data into R, to deal…

qpcR
Desktop

qpcR

An add-on to the free R statistical environment performing sigmoidal model…

An add-on to the free R statistical environment performing sigmoidal model selection in real-time quantitative polymerase chain reaction (PCR) data analysis.

LRE Analyzer
Desktop

LRE Analyzer

Automates real-time qPCR data analysis. LRE Analyzer uses a method called…

Automates real-time qPCR data analysis. LRE Analyzer uses a method called "Linear Regression of Efficiency" or LRE qPCR. The software enables large-scale absolute quantification without…

MCMC.qpcr
Desktop

MCMC.qpcr

This package implements generalized linear mixed model analysis of qRT-PCR data…

This package implements generalized linear mixed model analysis of qRT-PCR data based on lognormal-Poisson model fitted using MCMC.

quantGenius
Web

quantGenius

Allows to organize, make analysis of quantitative Polymerase Chain Reaction…

Allows to organize, make analysis of quantitative Polymerase Chain Reaction (qPCR) data and offers a decision support in various qPCR applications. quantGenius is based on a standard curve…

miRcomp
Desktop

miRcomp

An R package to assess and compare microRNA expression estimation methods using…

An R package to assess and compare microRNA expression estimation methods using a benchmark data set. Based on a large miRNA dilution study, miRcomp provides tools to read in the raw amplification…

miRcompData
Desktop

miRcompData

Allows researchers to easily generate expression estimates using other…

Allows researchers to easily generate expression estimates using other algorithms. miRcompData is a R package that provides raw amplification data from a large microRNA mixture/dilution study. This…

unifiedWMWqPCR
Desktop

unifiedWMWqPCR

Analyses RT-qPCR data with the uWMW test. This test, referred to as the unified…

Analyses RT-qPCR data with the uWMW test. This test, referred to as the unified WMW (uWMW) test, incorporates a robust and intuitive normalization and quantifies the probability that the expression…

SASqPCR
Desktop

SASqPCR

All-in-one computer program for robust and rapid analysis of RT-qPCR data in…

All-in-one computer program for robust and rapid analysis of RT-qPCR data in SAS.

G T A T C G C T A
UBiT2
Web
Desktop

UBiT2 User-friendly BioInformatics Tools

Provides installation-free, offline alignment, analysis, and visualization of…

Provides installation-free, offline alignment, analysis, and visualization of RNA-sequencing as well as qPCR data. UBiT2 can perform gene set enrichment testing by using the non-parametric minimal…

chipPCR
Desktop

chipPCR

An R package for the pre-processing and quality analysis of raw data of…

An R package for the pre-processing and quality analysis of raw data of amplification curves. The package takes advantage of R’s S4 object model and offers an extensible environment. chipPCR…

DAG expression
Desktop

DAG expression Data Analysis Gene expression

A simple and free application tool developed in vb.net to simplify the…

A simple and free application tool developed in vb.net to simplify the management and analysis of high-throughput gene expression data obtained by real time quantitative PCR.

Normalyzer
Desktop
Web

Normalyzer

Normalizes the uploaded data using twelve different well known normalization…

Normalizes the uploaded data using twelve different well known normalization methods and compares the resulting data based on quantitative and qualitative parameters. Normalyzer is completely…

REST
Desktop

REST Relative Expression Software Tool

Compares two groups for reference and up to four target genes. REST allows for…

Compares two groups for reference and up to four target genes. REST allows for a relative quantification between groups, and a subsequent test for significance of the derived results with a suitable…

SLqPCR
Desktop

SLqPCR

Offers functions for analysis of real-time quantitative PCR data at SIRS-Lab…

Offers functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH..

ddCt
Desktop

ddCt Delta-Delta-Ct

The ddCt Algorithm is an approximation method to determine relative gene…

The ddCt Algorithm is an approximation method to determine relative gene expression with quantitative real-time PCR (qRT-PCR) experiments. Compared to other approaches, it requires no standard curve…

EasyqpcR
Desktop

EasyqpcR

A package based on the qBase algorithms. EasyqpcR allows you to import easily…

A package based on the qBase algorithms. EasyqpcR allows you to import easily qPCR data files. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors,…

MAKERGAUL
Desktop

MAKERGAUL

A simple to handle open source software package for quantification of gene…

A simple to handle open source software package for quantification of gene expression data obtained by real time PCR technology.

pyQPCR
Desktop

pyQPCR

A GUI application written in python that deals with quantitative PCR (QPCR) raw…

A GUI application written in python that deals with quantitative PCR (QPCR) raw data.

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