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msIQuant
Enables the visualization, analysis of large data sets. msIQuant allows users to display and study data sets without data reduction. It has a quantitation function that generates calibration standard curves from series of standards that can be used to determine the concentrations of specific analyses. In summary, it supplies solution for accessing and evaluating data sets, quantifying drugs and endogenous compounds in tissue areas of interest, and for processing mass spectra and images.
MassImager
Serves for interactive and in-depth analysis of mass spectrometry imaging data. MassImager contains three subsystems: MassImager Solution, MassImager Visualization and MassImager Intelligence. The core design is aimed at user-friendly design, high throughput, instrument-independence, interactive visualization, various multivariate statistical analysis and pattern recognition of large mass spectrometry imaging (MSI) dataset. The tools provided by the MassImager solution can be classified in two categories: visual processing and image analysis.
CreateTarget
Enables matrix-assisted laser desorption/ionisation imaging mass spectrometry (MALDI-IMS) on Bruker Reflex and Ultraflex instruments. CreateTarget creates a high-density raster with the dimensions of the tissue section, and converts these parameters into a virtual target plate file. It can write the dimensions of the section (the virtual target plate), its position on the actual target plate, and the density of the raster pattern in the format of a geometry file which can be imported into the FlexControl software.
SCILS Lab
New
Assists users to analyze mass spectrometry imaging data. SCILS Lab includes a lot of functionalities allowing researchers to display multiple samples in both 2D and 3D and permitting a multitude of applications in pharmaceutical, medical, and industrial research. This software is composed of several features among which comparative analysis for uncovering discriminative m/z-markers, classification model calculation based on training data and classification of new samples, or extraction of underlying trends.
omniSpect
Obsolete
An open source web- and MATLAB-based software tool for both DESI and MALDI mass spectrometry imaging (MSI) that performs computationally intensive functions on a remote server. These functions include converting data from a variety of file formats into a common format easily manipulated in MATLAB, transforming time-series mass spectra into mass spectrometry images based on a probe spatial raster path, and multivariate analysis. OmniSpect provides an extensible suite of tools to meet the computational requirements needed for visualizing open and proprietary format MSI data.