Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Data integration software tools | Hi-C data analysis

G T A T C G C T A
Juicer
Desktop

Juicer

Analyzes terabase-scale Hi-C datasets. Juicer allows users without a…

Analyzes terabase-scale Hi-C datasets. Juicer allows users without a computational background to transform raw sequence data into normalized contact maps with one click. Juicer produces a hic file…

G T A T C G C T A
3DGenome_FruitF…
Desktop

3DGenome_FruitFly

Integrates experimental data obtained from different technologies to map the 3D…

Integrates experimental data obtained from different technologies to map the 3D structures of entire genomes. 3DGenome_FruitFly generates a large number of genome structures whose chromatin contacts…

G T A T C G C T A
InPhaDel
Desktop

InPhaDel Integrative Phasing of Deletions

A technique to phase deletions to SNVs using only WGS and HiC sequencing from a…

A technique to phase deletions to SNVs using only WGS and HiC sequencing from a single human donor. Phasing SNVs and deletions is similar to the haplotype assembly problem. InPhaDel addresses the…

G T A T C G C T A
HubPredictor
Desktop

HubPredictor

A computational model integrating Hi-C and histone mark ChIP-seq data to…

A computational model integrating Hi-C and histone mark ChIP-seq data to predict two important features of chromatin organization: chromatin interaction hubs and topologically associated domain (TAD)…

G T A T C G C T A
HiCdat
Desktop

HiCdat

Provides a simple graphical user interface for data pre-processing and a…

Provides a simple graphical user interface for data pre-processing and a collection of higher-level data analysis tools implemented in R. Data pre-processing also supports a wide range of additional…

G T A T C G C T A
HiCfeat
Desktop

HiCfeat Multiple Logistic Regression for 3D Chromatin Domain Border Analysis

Assess the influences of genomic features such as DNA-binding proteins and…

Assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders. HiCfeat is an R package offering a multiple logistic regression that can…

G T A T C G C T A
FisHiCal
Desktop

FisHiCal

Integrates Hi-C and FISH data, offering a modular and easy-to-use tool for…

Integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.

G T A T C G C T A
HiCglmi
Desktop

HiCglmi

A generalized linear regression with higher-order interaction terms to assess…

A generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.