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CATMAID / Collaborative Annotation Toolkit for Massive Amounts of Image Data
Allows to navigate, share and collaboratively annotate massive image data sets of biological specimens. CATMAID combines three main components: a centralized data server, decentralized image servers and the client-side user interface. The interface is applicable to any 2D or 3D multimodal biological image datasets, as shown in examples of stitched confocal 3D volumes. Additionally, the interface can be used to navigate, annotate and bookmark locations in any large image canvas.
VANO / Volume-object annotation system
Obsolete
Permits creation, edition, and annotation of a collection of globular objects. VANO is a cross-platform 3D annotator that can be used to build a 3D digital nuclei atlas for Caenorhabditis elegans and a 3D digital atlas of the nuclei of the ventral nerve cord of late stage Drosophila melanogaster embryos. This tool also serves for annotating images in contexts where the image objects have an irregular shape or for collecting prior information and statistics of image objects.
NeuroMorph
Obsolete
Allows users to analyze 3D models from segmentations of electron microscopy (EM) image stacks. NeuroMorph provides an assortment of tools executable through the Blender software that consists of five modules: (i) Measurements tools, (ii) 3D drawing, (iii) Center Lines and Cross Sections, (iv) Proximity Analysis and (v) a toolkit called “Other Tools” that provides additional functionalities for generating image stacks or to import objects. The modules can be downloaded separately or as a complete package.
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