Data simulation software tools | DNA methylation microarray data analysis
There is an unmet need for a DNA methylation data simulator that can accurately reproduce a wide range of experimental setups, and can be routinely used to compare the performance of different statistical models.
Allows identification of molecular subtypes of disease. InterSIM is a program that focuses on three types of data: (1) DNA methylation, (2) mRNAgene expression, and (3) protein expression. These data are come from three datasets based on the ovarian cancer study. Moreover, this tool can generate multiple types of omics data.
An R-package to simulate gene expression and DNA methylation data. The R-package quantroSim is the supporting data simulation package for the quantro R/Bioconductor package which can be used to simulate data from the epigenome including gene expression (microarrays, but will be extended to include RNA-Seq) and DNA methylation (microarrays).
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