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Read simulation software tools | Shotgun metagenomic sequencing data analysis

Metagenomics can reveal the vast majority of microbes that have been missed by traditional cultivation-based methods. Due to its extremely wide range of application areas, fast metagenome sequencing simulation systems with high fidelity are in great…
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MetaSim
Desktop

MetaSim

A package to facilitate the development and improvement of metagenomic tools…

A package to facilitate the development and improvement of metagenomic tools and the planning of metagenomic projects. MetaSim can be used to generate collections of synthetic reads that reflect the…

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Grinder
Desktop

Grinder

A versatile open-source bioinformatic tool to create simulated omic shotgun and…

A versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.

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GemSIM
Desktop

GemSIM

A software package for generating realistic simulated next-generation…

A software package for generating realistic simulated next-generation sequencing reads with quality score values.

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NeSSM
Desktop

NeSSM

Defines each position containing an explicit distribution of sequencing quality…

Defines each position containing an explicit distribution of sequencing quality values. Sequencing coverage bias can be considered in NeSSM. It can obtain metagenomic community compositions from…

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LRSim
Desktop

LRSim Simulator for Linked Reads

Simulates whole genome sequencing (WGS) modeled on Chromium Linked Read…

Simulates whole genome sequencing (WGS) modeled on Chromium Linked Read technology. LRSim allows fine tuning of both the type and number of variants and Illumina read specifications, and full control…

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BEAR
Desktop

BEAR Better Emulation for Artificial Reads

It is intended to be an easy-to-use collection of scripts for generating…

It is intended to be an easy-to-use collection of scripts for generating simulated WGS metagenomic reads with read lengths, quality scores, error profiles, and species abundances derived from real…

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FunctionSIM
Desktop

FunctionSIM

A sequencing simulator for functional metagenomics. As standalone software…

A sequencing simulator for functional metagenomics. As standalone software FunctionSIM allows users to simulate metagenomic sequence datasets that can be used as standardized test data for planning…

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