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Data visualization software tools | Shotgun metagenomic sequencing data analysis

The NGS (next generation sequencing)-based metagenomic data analysis is becoming the mainstream for the study of microbial communities. Faced with a large amount of data in metagenomic research, effective data visualization is important for…
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Taxonomer
Web

Taxonomer

An ultrafast web-tool for comprehensive metagenomics data analysis and…

An ultrafast web-tool for comprehensive metagenomics data analysis and interactive results visualization. Taxonomer is unique in providing integrated nucleotide and protein-based classification and…

Metacoder
Desktop

Metacoder

Allows the user to easily manipulate, parse and visualize metabarcoding data…

Allows the user to easily manipulate, parse and visualize metabarcoding data for microbial taxonomy identification. Many used formats are supported, containing sequences, taxons or classification.…

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Strainer
Desktop

Strainer

Assists in the processing of community genomic data. Strainer allows users to…

Assists in the processing of community genomic data. Strainer allows users to visualize and explore genetic variation inherent in natural populations. It enables basic analyses of within population…

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Explicet
Desktop

Explicet

Graphical user interface software for metadata-driven management, analysis, and…

Graphical user interface software for metadata-driven management, analysis, and visualization of microbiome data.

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GrammR
Desktop

GrammR Graphical representation and modeling of metagenomic Reads

A tool for graphical representation and clustering of metagenomic count data.…

A tool for graphical representation and clustering of metagenomic count data. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using…

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Krona
Desktop

Krona

Allows hierarchical data to be explored with zoomable pie charts. Krona aims to…

Allows hierarchical data to be explored with zoomable pie charts. Krona aims to answer questions regarding the relative abundance of taxa across multiple levels of the hierarchy simultaneously. The…

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VAMPS
Web

VAMPS Visualization and Analysis of Microbial Population Structures

An integrated collection of tools with which researchers can visualize and…

An integrated collection of tools with which researchers can visualize and analyze data for microbial population structures and distributions. The project includes visualization tools such as heat…

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Web-igloo
Web

Web-igloo

Visualizes multivariate data in a 2D chart of multiple quantitative variables…

Visualizes multivariate data in a 2D chart of multiple quantitative variables represented as anchors on a semicircle. Web-Igloo not only identifies clusters in data but also allows to infer the…

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MetaCoMET
Web

MetaCoMET Metagenomics Core Microbiome Exploration Tool

A web platform that enables the discovery and visualization of the core…

A web platform that enables the discovery and visualization of the core microbiome and provides a comparison of the relative abundance and diversity patterns between subsets of samples within a…

GraPhlAn
Web

GraPhlAn Graphical Phylogenetic Analysis

A tool for compact and publication-quality representation of circular taxonomic…

A tool for compact and publication-quality representation of circular taxonomic and phylogenetic trees with potentially rich sets of associated metadata. GraPhlAn was developed primarily for…

FuncTree
Web

FuncTree

Maps omics data onto a predefined circular dendrogram called the “Functional…

Maps omics data onto a predefined circular dendrogram called the “Functional Tree map”. FuncTree allows user to overview the broad functionality of their data, for a more accurate and…

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DAME
Web
Desktop

DAME Dynamic Assessment of Microbial Ecology

Performs microbial analysis of phylogenetic sequencing data. DAME assesses α-…

Performs microbial analysis of phylogenetic sequencing data. DAME assesses α- and β- diversity measurements and allows the differential analysis of sequencing count data. This web application…

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MetaGenSense
Desktop

MetaGenSense

Facilitates management and bioinformatics analysis of metagenomics…

Facilitates management and bioinformatics analysis of metagenomics data-samples. MetaGenSense integrates the capacity for large-scale genomic analysis and technical expertise in sequencing. It helps…

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Metaviz
Web

Metaviz

Provides a novel navigation tool for exploring hierarchical feature data that…

Provides a novel navigation tool for exploring hierarchical feature data that is coupled with multiple data visualizations including heatmaps, stacked bar charts, and scatter plots. Metaviz is a web…

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SynTView
Desktop
Web

SynTView

An interactive multi-view genome browser for next-generation comparative…

An interactive multi-view genome browser for next-generation comparative microorganism genomics.

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AmphoraVizu
Web

AmphoraVizu

A web application which can visualize outputs of the metagenomic analysis tools…

A web application which can visualize outputs of the metagenomic analysis tools AMPHORA2 and its web server implementation AmphoraNet.

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Elviz
Web

Elviz Environmental Laboratory Visualization

An interactive web-based tool for the visual exploration of assembled…

An interactive web-based tool for the visual exploration of assembled metagenomes and their complex metadata. Elviz allows scientists to navigate metagenome assemblies across multiple dimensions and…

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EMPeror
Desktop

EMPeror

An open source and web browser enabled tool with a versatile command line…

An open source and web browser enabled tool with a versatile command line interface that allows researchers to perform rapid exploratory investigations of 3D visualizations of microbial community…

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MGX
Desktop

MGX

Aims at the design and implementation of an analysis platform for metagenomics…

Aims at the design and implementation of an analysis platform for metagenomics data, which provides the necessary infrastructure to cope with the large amounts of sequence data and offer easy…

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CoVennTree
Web

CoVennTree Comparative weighted Venn Tree

Simultaneously compares up to three multifarious datasets by aggregating and…

Simultaneously compares up to three multifarious datasets by aggregating and propagating information from the bottom to the top level and produces a graphical output in Cytoscape. The underlying…

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MGAviewer
Desktop
Web

MGAviewer MetaGenomic Alignment Viewer

A visualization tool for analysis and comparison of mapping data, with a focus…

A visualization tool for analysis and comparison of mapping data, with a focus on virus and microorganisms NGS data. Compared to current visualization methods, which are often genome browsers, our…

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Community-analy…
Desktop

Community-analyzer

A GUI-based comparative metagenomic analysis application which implements a…

A GUI-based comparative metagenomic analysis application which implements a correlation-based graph layout algorithm that not only facilitates a quick visualization of the differences in the analyzed…

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MetaSee
Web

MetaSee

An extendable toolbox to facilitate the interactive visualization of…

An extendable toolbox to facilitate the interactive visualization of metagenomic samples of interests. MetaSee includes: (I) a core visualization engine that is composed of different views for…

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VITCOMIC
Web

VITCOMIC VIsualization tool for Taxonomic COmpositions of MIcrobial Community

Allows visualization of overall taxonomic composition of 16S rRNA gene-based…

Allows visualization of overall taxonomic composition of 16S rRNA gene-based microbial community analysis data. VITCOMIC produces figures that contain four categories of dot size that indicate the…

MetaLook
Desktop

MetaLook

Offers a three-dimensional user interface to interactively visualise DNA…

Offers a three-dimensional user interface to interactively visualise DNA sequences on a world map, based on a centralised georeferenced database. MetaLook is a software for visualisation and analysis…

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