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Data visualization software tools | Gene expression microarray data analysis

Comprehensive analysis of genome-wide molecular data challenges bioinformatics methodology in terms of intuitive visualization with single-sample resolution, biomarker selection, functional information mining and highly granular stratification of…
R. S. WebTool
Desktop
Web

R. S. WebTool

A user-friendly platform for Monte Carlo-based significance evaluation of…

A user-friendly platform for Monte Carlo-based significance evaluation of pairwise distances.

Mayday
Desktop
Web

Mayday

A workbench for visualization, analysis and storage of microarray data. It…

A workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods.…

Glimma
Desktop

Glimma

Creates interactive graphics for exploring gene expression analysis with a few…

Creates interactive graphics for exploring gene expression analysis with a few simple R commands. Glimma extends popular plots found in the limma package, such as multi-dimensional scaling plots and…

Mfuzz
Desktop

Mfuzz

Package for noise-robust soft clustering of gene expression time-series data…

Package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

Heatmapper
Web
Desktop

Heatmapper

Allows users to interactively visualize their data in the form of heat maps.…

Allows users to interactively visualize their data in the form of heat maps. Heatmapper is designed to be easily used and easily understood by both specialists and non-specialists, alike. Through its…

UpSetR
Web
Desktop

UpSetR

Creates visualizations of intersecting sets using a novel matrix design, along…

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks. UpSetR is a R package that employs a…

TilingScan
Desktop
Web

TilingScan

A web application for the visualization of strand-specific tiling microarray or…

A web application for the visualization of strand-specific tiling microarray or next-generation sequencing data that allows customized detection of differentially expressed regions all along the…

Oligo package
Desktop

Oligo package

Implements a unified framework for preprocessing microarray data and interfaces…

Implements a unified framework for preprocessing microarray data and interfaces with other BioConductor tools for downstream analysis. The Oligo package provides array coordinates, feature types,…

SEURAT
Desktop

SEURAT

A software tool which provides interactive visualization capability for the…

A software tool which provides interactive visualization capability for the integrated analysis of high-dimensional gene expression data.

MiCoViTo
Web

MiCoViTo Microarray Comparison Visualization Tool

Identifies and visualizes groups of genes that having similar expression in two…

Identifies and visualizes groups of genes that having similar expression in two sets of microarray experiments representing two distinct transcriptome states. MiCoViTo is a user-friendly tool…

ZODET
Desktop

ZODET z-score outlier detection

A graphical software package that enables identification and visualisation of…

A graphical software package that enables identification and visualisation of gross abnormalities in gene expression (outliers) in individuals, using whole genome microarray data.

corrplot
Desktop

corrplot

Visualizes correlation matrix. The corrplot package is a graphical display of a…

Visualizes correlation matrix. The corrplot package is a graphical display of a correlation matrix, confidence interval. It also contains some algorithms to do matrix reordering. It offers some…

pairheatmap
Desktop

pairheatmap

A tool to compare two heatmaps and discover patterns within and across groups.

A tool to compare two heatmaps and discover patterns within and across groups.

HeatMapViewer
Desktop

HeatMapViewer

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat…

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray…

CGH-Explorer
Desktop

CGH-Explorer

A program for visualization and statistical analysis of microarray-based…

A program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data.

MeV
Desktop

MeV MultiExperiment Viewer

A versatile microarray data analysis tool, incorporating sophisticated…

A versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis and biological theme discovery.

Annmap
Web

Annmap

A genome browser that includes mappings between genomic features and Affymetrix…

A genome browser that includes mappings between genomic features and Affymetrix microarrays. Annmap supports Human, Mouse, Rat, S. pombe and S. cerevisiae genomes, and the Exon and Plus 2 arrays are…

UpSet
Web

UpSet

Visualizes set intersections in a matrix layout and introduces aggregates based…

Visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. UpSet is a visualization technique for the quantitative analysis of sets, their…

TreeView
Desktop

TreeView

Graphically browse results of clustering and other analyses from Cluster.

Graphically browse results of clustering and other analyses from Cluster.

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