tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.

Data visualization software tools | Gene expression microarray data analysis

Comprehensive analysis of genome-wide molecular data challenges bioinformatics methodology in terms of intuitive visualization with single-sample resolution, biomarker selection, functional information mining and highly granular stratification of…
R. S. WebTool
Desktop
Web

R. S. WebTool

A user-friendly platform for Monte Carlo-based significance evaluation of…

A user-friendly platform for Monte Carlo-based significance evaluation of pairwise distances.

Mayday
Desktop
Web

Mayday

A workbench for visualization, analysis and storage of microarray data. It…

A workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods.…

Mfuzz
Desktop

Mfuzz

Package for noise-robust soft clustering of gene expression time-series data…

Package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

TilingScan
Desktop
Web

TilingScan

A web application for the visualization of strand-specific tiling microarray or…

A web application for the visualization of strand-specific tiling microarray or next-generation sequencing data that allows customized detection of differentially expressed regions all along the…

MeV
Desktop
Web

MeV Multiple experiment Viewer

Allows to analyse, visualise and stratify large genomic data. MeV is a…

Allows to analyse, visualise and stratify large genomic data. MeV is a cloud-based application that gives access to genomic analysis tools, large public domain data sets, intuitive user interfaces,…

Oligo package
Desktop

Oligo package

Implements a unified framework for preprocessing microarray data and interfaces…

Implements a unified framework for preprocessing microarray data and interfaces with other BioConductor tools for downstream analysis. The Oligo package provides array coordinates, feature types,…

SEURAT
Desktop

SEURAT

A software tool which provides interactive visualization capability for the…

A software tool which provides interactive visualization capability for the integrated analysis of high-dimensional gene expression data.

TreeView
Desktop

TreeView

Allows visualization of microarray data. TreeView is an open source,…

Allows visualization of microarray data. TreeView is an open source, cross-platform which offers several views, including dendrogram, scatterplot, karyoscope and alignment, with visual cues to show…

ZODET
Desktop

ZODET z-score outlier detection

A graphical software package that enables identification and visualisation of…

A graphical software package that enables identification and visualisation of gross abnormalities in gene expression (outliers) in individuals, using whole genome microarray data.

G T A T C G C T A
debrowser
Web
Desktop

debrowser

Allows users to visualize expression data. debrowser is customizable by user,…

Allows users to visualize expression data. debrowser is customizable by user, this permits to consult different parts of the contents. This tool assists users to do plots easily without writing any…

UpSet
Web
Desktop

UpSet

Enables to investigate set-based data. UpSet is a visualization technique for…

Enables to investigate set-based data. UpSet is a visualization technique for the quantitative analysis of sets, their intersections, and aggregates of intersections. User can visualize set…

corrplot
Desktop

corrplot

Visualizes correlation matrix. The corrplot package is a graphical display of a…

Visualizes correlation matrix. The corrplot package is a graphical display of a correlation matrix, confidence interval. It also contains some algorithms to do matrix reordering. It offers some…

CGH-Explorer
Desktop

CGH-Explorer

A program for visualization and statistical analysis of microarray-based…

A program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data.

Annmap
Web

Annmap

A genome browser that includes mappings between genomic features and Affymetrix…

A genome browser that includes mappings between genomic features and Affymetrix microarrays. Annmap supports Human, Mouse, Rat, S. pombe and S. cerevisiae genomes, and the Exon and Plus 2 arrays are…

MiCoViTo
Web

MiCoViTo Microarray Comparison Visualization Tool

Identifies and visualizes groups of genes that having similar expression in two…

Identifies and visualizes groups of genes that having similar expression in two sets of microarray experiments representing two distinct transcriptome states. MiCoViTo is a user-friendly tool…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.