Comprehensive analysis of genome-wide molecular data challenges bioinformatics methodology in terms of intuitive visualization with single-sample resolution, biomarker selection, functional information mining and highly granular stratification of sample classes. Source text:…
Desktop app
Web app
R. S. WebTool R. S. WebTool

R. S. WebTool

A user-friendly platform for Monte Carlo-based significance evaluation of…

A user-friendly platform for Monte Carlo-based significance evaluation of pairwise distances.

Web app
Annmap Annmap

Annmap

A genome browser that includes mappings between genomic features and Affymetrix…

A genome browser that includes mappings between genomic features and Affymetrix microarrays. Annmap supports Human, Mouse, Rat, S. pombe and S. cerevisiae genomes, and the Exon and Plus 2 arrays are…

Desktop app
Web app
Mayday Mayday

Mayday

A workbench for visualization, analysis and storage of microarray data. It…

A workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods.…

Desktop app
SEURAT SEURAT

SEURAT

A software tool which provides interactive visualization capability for the…

A software tool which provides interactive visualization capability for the integrated analysis of high-dimensional gene expression data.

Desktop app
Oligo package Oligo package

Oligo package

Implements a unified framework for preprocessing microarray data and interfaces…

Implements a unified framework for preprocessing microarray data and interfaces with other BioConductor tools for downstream analysis. The Oligo package provides array coordinates, feature types,…

Desktop app
Web app
TilingScan TilingScan

TilingScan

A web application for the visualization of strand-specific tiling microarray or…

A web application for the visualization of strand-specific tiling microarray or next-generation sequencing data that allows customized detection of differentially expressed regions all along the…

Web app
Desktop app
Heatmapper Heatmapper

Heatmapper

Allows users to interactively visualize their data in the form of heat maps.…

Allows users to interactively visualize their data in the form of heat maps. Heatmapper is designed to be easily used and easily understood by both specialists and non-specialists, alike. Through its…

Desktop app
HeatMapViewer HeatMapViewer

HeatMapViewer

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat…

A BioJS component that lays-out and renders two-dimensional (2D) plots or heat maps that are ideally suited to visualize matrix formatted data in biology such as for the display of microarray…

Desktop app
pairheatmap pairheatmap

pairheatmap

A tool to compare two heatmaps and discover patterns within and across groups.

A tool to compare two heatmaps and discover patterns within and across groups.

Desktop app
z-score outlier… z-score outlier detection

ZODET z-score outlier detection

A graphical software package that enables identification and visualisation of…

A graphical software package that enables identification and visualisation of gross abnormalities in gene expression (outliers) in individuals, using whole genome microarray data.

Desktop app
CGH-Explorer CGH-Explorer

CGH-Explorer

A program for visualization and statistical analysis of microarray-based…

A program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data.

Desktop app
Mfuzz Mfuzz

Mfuzz

Package for noise-robust soft clustering of gene expression time-series data…

Package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

Desktop app
TreeView TreeView

TreeView

Graphically browse results of clustering and other analyses from Cluster.

Graphically browse results of clustering and other analyses from Cluster.

Desktop app
MultiExperiment Viewer MultiExperiment Viewer

MeV MultiExperiment Viewer

A versatile microarray data analysis tool, incorporating sophisticated…

A versatile microarray data analysis tool, incorporating sophisticated algorithms for clustering, visualization, classification, statistical analysis and biological theme discovery.

Advertisements
Join Omic Community

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.