database.bio specifications

Information


Unique identifier OMICS_09796
Name database.bio
Interface Web user interface
Restrictions to use None
Input data Database.bio accepts input in VCF, 23andMe, BAM, and SNAPSHOT formats.
Computer skills Basic
Stability No
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for database.bio

database.bio in publications

 (4)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] in csv format in the form of peak tables, and it has some basic tools for comparative analysis where volcano plots can be generated comparing different experiments. by contrast, in the more general database bio-massbank [], a repository of lc-ms and gc-ms data from biological samples, in contrast with the original massbank in this database, most of the data are tagged as “unknown” […]

PMCID: 4765207
PMID: 26906565
DOI: 10.1186/s12985-016-0491-9

[…] compared their relative expression levels in the two physiologically relevant cell types, primary human cd4+ t cells and primary monocytic cells. we employed the publically available mrna expression database bio-gps []. this analysis revealed a strikingly high level of sult1a1 mrna in cd14+ monocytes as compared to other other cell types including cd4+ t cells (additional file : figure s1). […]

PMCID: 4265157
PMID: 25316063
DOI: 10.1093/jxb/eru410

[…] to sequences from mosses that have been designated as ugt718 and ugt719 ()., gene expression patterns were surveyed for ugt80a2, ugt80b1, and ugt713b1 using the publicly available transcriptome database bio-analytic resource (bar) arabidopsis efp browser. notably, ugt80a2 and ugt80b1 seem to exhibit similar gene expression profiles in various tissues under numerous conditions. for dry seeds […]

PMCID: 2770569
PMID: 19835627
DOI: 10.1186/1471-2407-9-368

[…] of individual spots on scanned arrays was performed with genepix pro software 6.0.1.12 (axon instruments, union city, ca, usa), and the quantified data matrix was loaded into the web-based database bio array software environment (base) http://base.thep.lu.se/[]., background correction of cy3 and cy5 intensities was calculated using median-feature and median-local background, generating […]


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database.bio institution(s)
HKU-BGI Bioinformatics Algorithms Research Laboratory & Department of Computer Science, University of Hong Kong, Hong Kong
database.bio funding source(s)
This research is benefited from GRF grant HKU-713512E and ITF grant GHP/011/12, and the insightful comments of ESK Ma.

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