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DATF specifications

Information


Unique identifier OMICS_00551
Name DATF
Alternative name Database of Arabidopsis Transcription Factors
Restrictions to use None
Maintained Yes

Publication for Database of Arabidopsis Transcription Factors

DATF citations

 (20)
library_books

Transcriptome analysis of nitric oxide responsive genes in upland cotton (Gossypium hirsutum)

2018
PLoS One
PMCID: 5841646
PMID: 29513679
DOI: 10.1371/journal.pone.0192367

[…] es through binding certain upstream elements []. Previous studies have revealed sets of TF families genes that are regulated by NO []. We therefore performed a local BLASTP, using the TF sequences in DATF as database and the translated protein sequences of DEGs as queries. The matched sequences were further confirmed by a Batch CD-search in CDD. As a result, a total of 157 TFs belonging to 36 TF f […]

library_books

Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses

2015
Nucleic Acids Res
PMCID: 4838348
PMID: 26681689
DOI: 10.1093/nar/gkv1463

[…] A list of 1926 Arabidopsis TFs was compiled from DATF: a database of Arabidopsis TFs (), PlantTFDB: the plant TF database () and ‘The Arabidopsis Information Resource’ (TAIR) (). Eleven stress-wise lists of TFs differentially expressed during the st […]

library_books

Gene to metabolite network for biosynthesis of lignans in MeJA elicited Isatis indigotica hairy root cultures

2015
Front Plant Sci
PMCID: 4630570
PMID: 26579184
DOI: 10.3389/fpls.2015.00952

[…] ously established I. indigotica transcriptome inventory was used (Chen et al., ). The assembled transcriptome was queried against 159 known A. thaliana AP2/ERF proteins (AtAP2/ERF) retrieved from the Database of Arabidopsis Transcription Factors (DATF, http://datf.cbi.pku.edu.cn/) and 321 Chinese cabbage AP2/ERF proteins (BraAP2/ERF) obtained from the Brassica Database (BRAD, http://brassicadb.org […]

library_books

Genome Wide Analysis of the AP2/ERF Family in Eucalyptus grandis: An Intriguing Over Representation of Stress Responsive DREB1/CBF Genes

2015
PLoS One
PMCID: 4388522
PMID: 25849589
DOI: 10.1371/journal.pone.0121041

[…] annotated E. grandis genome sequence (V1.1) is available at Phytozome website (http://www.phytozome.net/eucalyptus.php). The genomic sequences of A. thaliana AP2/ERF family were down-loaded from the DATF (Database of Arabidopsis Transcription Factors) database website (http://datf.cbi.pku.edu.cn) []. The genomic sequences of the AP2/ERF family genes from Vitis, Populus and Malus were obtained fro […]

library_books

Flower Bud Transcriptome Analysis of Sapium sebiferum (Linn.) Roxb. and Primary Investigation of Drought Induced Flowering: Pathway Construction and G Quadruplex Prediction Based on Transcriptome

2015
PLoS One
PMCID: 4349590
PMID: 25738565
DOI: 10.1371/journal.pone.0118479

[…] To build a HMMER model for searching translated S. sebiferum sequence, the Arabidopsis MADS box protein was collected from the Database of Arabidopsis Transcription Factors (DATF), then aligned by BioEdit. The multialigned sequences were trimmed in Jalview [] to retain the MADS box domain. Then, the MADS box dataset was reali […]

library_books

Analysis of Arabidopsis floral transcriptome: detection of new florally expressed genes and expansion of Brassicaceae specific gene families

2015
Front Plant Sci
PMCID: 4299442
PMID: 25653662
DOI: 10.3389/fpls.2014.00802

[…] ched against protein family models in the Pfam-A database, resulting in 21102 Arabidopsis proteins identified as having at least one Pfam domain. Transcription factor family annotations were from The Database of Arabidopsis Transcription Factors (http://datf.cbi.pku.edu.cn/) (Guo et al., ), which contains 1922 transcription factors in Arabidopsis. Gene ontology (GO) enrichment analysis was perform […]

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DATF institution(s)
Center for Bioinformatics, Beijing, China

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